diglezakis > reproducibility

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1CODECHECK | CODECHECK is a process for independent execution of computations underlying scholarly research articles.
CODECHECK is a process for independent execution of computations underlying scholarly research articles.
2 years ago by @diglezakis
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1ReproHack Hub
Hackathons providing sandbox environments for practicing reproducible research. Use the Hub to organise events, submit papers for reproduction, record and feed back reviews
3 years ago by @diglezakis
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openScience
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forschungsdatenopenSciencereproducibility
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1Welcome — The Turing Way
https://the-turing-way.netlify.app/welcome.html
3 years ago by @diglezakis
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1Maneage -- Managing data lineage
https://maneage.org/
3 years ago by @diglezakis
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1GRN · German Reproducibility Network
Working together for trustworthy and useful research
4 years ago by @diglezakis
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1Guix-HPC — Towards reproducible Jupyter notebooks
Ansatz, um die Abhängigkeiten von Jupyter-Notebooks definieren und (temporär) auflösen zu können, ohne etwas an der lokalen Installation ändern zu müssen
5 years ago by @diglezakis
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1Missing data hinder replication of artificial intelligence studies | Science | AAAS
Unpublished code and sensitive training conditions aggravate reproducibility crisis in computer science
7 years ago by @diglezakis
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artificialIntelligence
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1Reproduciblity in High-Performance Computing
http://delivery.acm.org/10.1145/2900000/2897788/stodden.mp4?ip=129.69.140.138&id=2897788&acc=OPEN&key=2BA2C432AB83DA15%2EB24C68F3238D7605%2E4D4702B0C3E38B35%2E6D218144511F3437&CFID=808693678&CFTOKEN=50099851&__acm__=1505303373_25a1b9c40b22d48b9bb9aab474c7cc3c
7 years ago by @diglezakis
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1FAIR Jupyter: a knowledge graph approach to semantic sharing and granular exploration of a computational notebook reproducibility dataset
S. Samuel, and D. Mietchen. (2024)
6 months ago by @diglezakis
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1Computational reproducibility of Jupyter notebooks from biomedical publications
S. Samuel, and D. Mietchen. (2022)
2 years ago by @diglezakis
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1Studies in Analytical Reproducibility: the Conquaire Project
P. Cimiano, C. Pietsch, and C. Wiljes. (2021)Artwork Size: 8057464 bytesISBN: 9783943363067Medium: application/pdfPublisher: Universität Bielefeld.
2 years ago by @diglezakis
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1Including Data Management in Research Culture Increases the Reproducibility of Scientific Results
C. Riedel, H. Geßner, A. Seegebrecht, S. Ayon, S. Chowdhury, R. Engbert, and U. Lucke. (2022)
2 years ago by @diglezakis
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1Round Robin Study: Molecular Simulation of Thermodynamic Properties from Models with Internal Degrees of Freedom
M. Schappals, A. Mecklenfeld, L. Kröger, V. Botan, A. Köster, S. Stephan, E. García, G. Rutkai, G. Raabe, P. Klein and 5 other author(s). Journal of Chemical Theory and Computation, 13 (9): 4270-4280 (2017)PMID: 28738147.
6 years ago by @diglezakis
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chemistry
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chemistryforschungsdatenmotivationreproducibilitysimulationsthermodynamics
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2Provenance-Based Retrieval: Fostering Reuse and Reproducibility Across Scientific Disciplines
L. Carvalho, R. Silveira, C. Pereira, M. Skaf, and C. Medeiros. Provenance and Annotation of Data and Processes, page 183--186. Cham, Springer International Publishing, (2016)
7 years ago by @diglezakis
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forschungsdatenprovenancereproducibilityworkflows
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4State of the Art: Reproducibility in Artificial Intelligence
O. Gundersen, and S. Kjensmo. Proceedings of the 32nd AAAI Conference on Artificial Intelligence (AAAI-18), Association for the Advancement of Artificial Intelligence, (2018)
7 years ago by @diglezakis
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artificialIntelligence
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artificialIntelligenceforschungsdatenreproducibilitysoftware
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2Replizierbarkeit von Forschungsergebnissen Eine Stellungnahme der Deutschen Forschungsgemeinschaft
DFG. Stellungnahme, Deutsche Forschungsgemeinschaft, (April 2017)
7 years ago by @diglezakis
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2Repeatability and Benefaction in Computer Systems Research
C. Collberg, T. Proebsting, and A. Warren. studie, (2015)
7 years ago by @diglezakis
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reproducibility
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softwareLizenzMotivation
reproducibilitysoftwaresoftwareLizenzMotivation
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2An Introduction to Docker for Reproducible Research
C. Boettiger. SIGOPS Oper. Syst. Rev., 49 (1): 71--79 (January 2015)
7 years ago by @diglezakis
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docker
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dockerforschungsdatenreproducibilitysoftwaresoftwareLizenzMotivation
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2Enhancing reproducibility for computational methods
V. Stodden, M. McNutt, D. Bailey, E. Deelman, Y. Gil, B. Hanson, M. Heroux, J. Ioannidis, and M. Taufer. Science, 354 (6317): 1240–1241 (2016)
7 years ago by @diglezakis
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forschungsdatenlitQSaFEreproducibilitysoftwaresoftwareLizenzMotivation
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2AiiDA: automated interactive infrastructure and database for computational science
G. Pizzi, A. Cepellotti, R. Sabatini, N. Marzari, and B. Kozinsky. Computational Materials Science, (2016)
7 years ago by @diglezakis
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forschungsdatenframeworkhpc-computingmetadatarepositorysoftwaresoftwareLizenzMotivationreproducibility
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1Lessons from the JMCB archive
K. McGeary, B. McCullough, and T. Harrison. Journal of money credit and banking, 38 (4): 1093-1107 (February 2006)
7 years ago by @diglezakis
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3Ten Simple Rules for Reproducible Computational Research
G. Sandve, A. Nekrutenko, J. Taylor, and E. Hovig. PLOS Computational Biology, 9 (10): 1-4 (October 2013)
7 years ago by @diglezakis
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2Git can facilitate greater reproducibility and increased transparency in science
K. Ram. Source Code for Biology and Medicine, 8 (1): 7 (Feb 28, 2013)
7 years ago by @diglezakis
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1Madagascar: open-source software project for multidimensional data analysis and reproducible computational experiments
S. Fomel, P. Sava, I. Vlad, Y. Liu, and V. Bashkardin. Journal of Open Research Software, (2013)
7 years ago by @diglezakis
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forschungsdatensoftwarereproducibility
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1ALAN TURING INSTITUTE SYMPOSIUM ON REPRODUCIBILITY FOR DATA-INTENSIVE RESEARCH--FINAL REPORT
L. Burgess, D. Crotty, D. de Roure, J. Gibbons, C. Goble, P. Missier, R. Mortier, T. Nichols, and R. O’Beirne. (2016)
7 years ago by @diglezakis
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2Reproducible Research for Scientific Computing: Tools and Strategies for Changing the Culture.
V. Stodden, R. LeVeque, and I. Mitchell. Computing in Science Engineering, 14 (4): 13-17 (July 2012)
7 years ago by @diglezakis
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softwaresoftwareLizenzMotivationreproducibility
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1Toward Reproducible Computational Research: An Empirical Analysis of Data and Code Policy Adoption by Journals
V. Stodden, P. Guo, and Z. Ma. PLOS ONE, 8 (6): 1-8 (June 2013)
7 years ago by @diglezakis
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journalssoftwaresoftwareLizenzMotivationreproducibility
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1Reproducible Research in Computational Science
R. Peng. Science, 334 (6060): 1226-1227 (December 2011)
7 years ago by @diglezakis
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research
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researchreproducibility
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1CODECHECK | CODECHECK is a process for independent execution of computations underlying scholarly research articles.

1ReproHack Hub

1Welcome — The Turing Way

1Maneage -- Managing data lineage

1GRN · German Reproducibility Network

1Guix-HPC — Towards reproducible Jupyter notebooks

1Missing data hinder replication of artificial intelligence studies | Science | AAAS

1Reproduciblity in High-Performance Computing

publications (hide)20
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1FAIR Jupyter: a knowledge graph approach to semantic sharing and granular exploration of a computational notebook reproducibility dataset

1Computational reproducibility of Jupyter notebooks from biomedical publications

1Studies in Analytical Reproducibility: the Conquaire Project

1Including Data Management in Research Culture Increases the Reproducibility of Scientific Results

1Round Robin Study: Molecular Simulation of Thermodynamic Properties from Models with Internal Degrees of Freedom

2Provenance-Based Retrieval: Fostering Reuse and Reproducibility Across Scientific Disciplines

4State of the Art: Reproducibility in Artificial Intelligence

2Replizierbarkeit von Forschungsergebnissen Eine Stellungnahme der Deutschen Forschungsgemeinschaft

2Repeatability and Benefaction in Computer Systems Research

2An Introduction to Docker for Reproducible Research

2Enhancing reproducibility for computational methods

2AiiDA: automated interactive infrastructure and database for computational science

1Lessons from the JMCB archive

3Ten Simple Rules for Reproducible Computational Research

2Git can facilitate greater reproducibility and increased transparency in science

1Madagascar: open-source software project for multidimensional data analysis and reproducible computational experiments

1ALAN TURING INSTITUTE SYMPOSIUM ON REPRODUCIBILITY FOR DATA-INTENSIVE RESEARCH--FINAL REPORT

2Reproducible Research for Scientific Computing: Tools and Strategies for Changing the Culture.

1Toward Reproducible Computational Research: An Empirical Analysis of Data and Code Policy Adoption by Journals

1Reproducible Research in Computational Science

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