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MeDIP-HMM: genome-wide identification of distinct DNA methylation states from high-density tiling arrays., , , , , and . Bioinformatics, 28 (22): 2930-2939 (2012)histoneHMM: Differential analysis of histone modifications with broad genomic footprints., , , , , , , , and . BMC Bioinformatics, (2015)Comparing genome-wide chromatin profiles using ChIP-chip or ChIP-seq., , , , , , , , , and . Bioinformatics, 26 (8): 1000-1006 (2010)Computational tools for plant small RNA detection and categorization., and . Briefings in Bioinformatics, 20 (4): 1181-1192 (2019)Performance-Directed Retiming for FPGAs Using Post-Placement Delay Information., , and . DATE, page 10770-10777. IEEE Computer Society, (2003)Kraftwerk2 - A Fast Force-Directed Quadratic Placement Approach Using an Accurate Net Model., , and . IEEE Trans. on CAD of Integrated Circuits and Systems, 27 (8): 1398-1411 (2008)GORDIAN: VLSI placement by quadratic programming and slicing optimization., , , and . IEEE Trans. on CAD of Integrated Circuits and Systems, 10 (3): 356-365 (1991)Iterative placement improvement by network flow methods., , and . IEEE Trans. on CAD of Integrated Circuits and Systems, 13 (10): 1189-1200 (1994)Fast and robust quadratic placement combined with an exact linear net model., and . ICCAD, page 179-186. ACM, (2006)Architectures for Parallel Slicing Enumeration in VLSI Layout., and . Parallel Computer Architectures, volume 732 of Lecture Notes in Computer Science, page 219-233. Springer, (1993)