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Model Transformation of Metabolic Networks using a Petri Net Based Framework.

D. Machado, R. Costa, M. Rocha, I. Rocha, B. Tidor, and E. Ferreira. ACSD/Petri Nets Workshops, volume 827 of CEUR Workshop Proceedings, page 103-117. CEUR-WS.org, (2010)

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Dr. -Ing. Daniel Holder University of Stuttgart

Hybrid Project Management in Design-Technology Convergence: Addressing the ever-changing world in the Automotive IndustryF. "Reichelt, D. "Holder, and T. "Maier. (June 2024)

Daniel Marino

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Daniel Roth

Daniel Roth

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Large Scale Dynamic Model Reconstruction for the Central Carbon Metabolism of Escherichia coli .R. Costa, D. Machado, I. Rocha, and E. Ferreira. IWANN (2), volume 5518 of Lecture Notes in Computer Science, page 1079-1083. Springer, (2009)A kinetic model for curcumin production in Escherichia coli.D. Machado, L. Rodrigues, and I. Rocha. Biosystems, (2014)getALife - An Artificial Life Environment for the Evaluation of Agent-Based Systems and Evolutionary Algorithms for Reinforcement Learning.D. Machado, and M. Rocha. New Challenges in Applied Intelligence Technologies, volume 134 of Studies in Computational Intelligence, Springer, (2008)Care Partnerships: Toward Technology to Support Teens' Participation in Their Health Care.M. Hong, L. Wilcox, D. Machado, T. Olson, and S. Simoneaux. CHI, page 5337-5349. ACM, (2016)Random sampling of elementary flux modes in large-scale metabolic networks.D. Machado, Z. Soons, K. Patil, E. Ferreira, and I. Rocha. Bioinformatics, 28 (18): 515-521 (2012)Stoichiometric Representation of Gene-Protein-Reaction Associations Leverages Constraint-Based Analysis from Reaction to Gene-Level Phenotype Prediction.D. Machado, M. Herrgård, and I. Rocha. PLoS Computational Biology, (2016)Systematic Evaluation of Methods for Integration of Transcriptomic Data into Constraint-Based Models of Metabolism.D. Machado, and M. Herrgård. PLoS Computational Biology, (2014)Model Transformation of Metabolic Networks using a Petri Net Based Framework.D. Machado, R. Costa, M. Rocha, I. Rocha, B. Tidor, and E. Ferreira. ACSD/Petri Nets Workshops, volume 827 of CEUR Workshop Proceedings, page 103-117. CEUR-WS.org, (2010)Multi-level Dynamic Modeling in Biological Systems - Application of Hybrid Petri Nets to Network Simulation.R. Costa, D. Machado, A. Neves, and S. Vinga. BIOINFORMATICS, page 317-321. SciTePress, (2012)Hybrid dynamic modeling of Escherichia coli central metabolic network combining Michaelis-Menten and approximate kinetic equations.R. Costa, D. Machado, I. Rocha, and E. Ferreira. Biosystems, 100 (2): 150-157 (2010)