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Phylogenetic Networks: Modeling, Reconstructibility, and Accuracy.

, , , , , , , and . IEEE/ACM Trans. Comput. Biology Bioinform., 1 (1): 13-23 (2004)

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Phylogenetic Reconstruction from Complete Gene Orders of Whole Genomes., , , and . APBC, volume 6 of Advances in Bioinformatics and Computational Biology, page 241-250. Imperial College Press, (2008)NetGen: generating phylogenetic networks with diploid hybrids., and . Bioinformatics, 22 (15): 1921-1923 (2006)Evaluating synteny for improved comparative studies., and . Bioinformatics, 30 (12): 9-18 (2014)Probabilistic partitioning methods to find significant patterns in ChIP-Seq data., , , and . Bioinformatics, 30 (17): 2406-2413 (2014)A Metric for Phylogenetic Trees Based on Matching., , and . IEEE/ACM Trans. Comput. Biology Bioinform., 9 (4): 1014-1022 (2012)Maximum independent sets of commuting and noninterfering inversions., , , and . BMC Bioinformatics, (2009)Heuristics for the inversion median problem., , , , and . BMC Bioinformatics, 11 (S-1): 30 (2010)Estimating true evolutionary distances under rearrangements, duplications, and losses., , , and . BMC Bioinformatics, 11 (S-1): 54 (2010)On Computing Breakpoint Distances for Genomes with Duplicate Genes., and . Journal of Computational Biology, 24 (6): 571-580 (2017)An Exact Algorithm to Compute the Double-Cut-and-Join Distance for Genomes with Duplicate Genes., , and . Journal of Computational Biology, 22 (5): 425-435 (2015)