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On the number of elements to reorder when updating a suffix array., , and . J. Discrete Algorithms, (2012)Querying large read collections in main memory: a versatile data structure., , , , , and . BMC Bioinformatics, (2011)Dynamic Burrows-Wheeler Transform., , , and . Stringology, page 13-25. Prague Stringology Club, Department of Computer Science and Engineering, Faculty of Electrical Engineering, Czech Technical University in Prague, (2008)Efficient pattern matching in degenerate strings with the Burrows-Wheeler transform., , , , , , , , and . Inf. Process. Lett., (2019)FM-index of alignment with gaps., , , , , , , and . Theor. Comput. Sci., (2018)Dynamic extended suffix arrays., , , and . J. Discrete Algorithms, 8 (2): 241-257 (2010)Three Strategies for the Dead-Zone String Matching Algorithm., , , , , , , , and . Stringology, page 117-128. Czech Technical University in Prague, Faculty of Information Technology, Department of Theoretical Computer Science, (2018)A survey of string orderings and their application to the Burrows-Wheeler transform., , , , , , and . Theor. Comput. Sci., (2018)Speeding up the detection of evolutive tandem repeats., , and . Theor. Comput. Sci., 310 (1-3): 309-328 (2004)Efficient pattern matching in degenerate strings with the Burrows-Wheeler transform., , , , , , , , and . CoRR, (2017)