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A Scalable Indexing Solution to Mine Huge Genomic Sequence Collections., , , , , and . ERCIM News, (2012)A four-stage algorithm for updating a Burrows-Wheeler transform., , , and . Theor. Comput. Sci., 410 (43): 4350-4359 (2009)On the number of elements to reorder when updating a suffix array., , and . J. Discrete Algorithms, (2012)Querying large read collections in main memory: a versatile data structure., , , , , and . BMC Bioinformatics, (2011)Indexing labeled sequences., , and . PeerJ Computer Science, (2018)Dynamic Burrows-Wheeler Transform., , , and . Stringology, page 13-25. Prague Stringology Club, Department of Computer Science and Engineering, Faculty of Electrical Engineering, Czech Technical University in Prague, (2008)SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelines., , , , , , and . BMC Bioinformatics, 18 (1): 428:1-428:14 (2017)Dynamic extended suffix arrays., , , and . J. Discrete Algorithms, 8 (2): 241-257 (2010)Approximate search of short patterns with high error rates using the 01⁎0 lossless seeds., , , and . J. Discrete Algorithms, (2016)Lossless Seeds for Searching Short Patterns with High Error Rates., , and . IWOCA, volume 8986 of Lecture Notes in Computer Science, page 364-375. Springer, (2014)