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TB database: an integrated platform for tuberculosis research., , , , , , , , , and 13 other author(s). Nucleic Acids Research, 37 (Database-Issue): 499-508 (2009)Comparative Gene Prediction using Conditional Random Fields., , , , and . NIPS, page 1441-1448. MIT Press, (2006)Combo: a whole genome comparative browser., , , , , and . Bioinformatics, 22 (14): 1782-1783 (2006)Coordinated regulation of acid resistance in Escherichia coli., , , , , , , , , and 59 other author(s). BMC Systems Biology, 11 (1): 1:1-1:15 (2017)Interpreting Expression Data with Metabolic Flux Models: Predicting Mycobacterium tuberculosis Mycolic Acid Production., , , , , , , , , and . PLoS Computational Biology, (2009)Learning Modular Structures from Network Data and Node Variables., , and . ICML, volume 32 of JMLR Workshop and Conference Proceedings, page 1440-1448. JMLR.org, (2014)Improving genome annotations using phylogenetic profile anomaly detection., , and . Bioinformatics, 21 (4): 464-470 (2005)Metabolic modeling predicts metabolite changes in Mycobacterium tuberculosis., , and . BMC Systems Biology, (2015)Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM., , , , , and . PLoS Computational Biology, (2013)The Mycobacterium tuberculosis regulatory network and hypoxia., , , , , , , , , and 35 other author(s). Nature, 499 (7457): 178-183 (2013)