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WIST: toolkit for rapid, customized LIMS development., , and . Bioinformatics, 27 (3): 437-438 (2011)Genetic Selection for Context-Dependent Stochastic Phenotypes: Sp1 and TATA Mutations Increase Phenotypic Noise in HIV-1 Gene Expression., , , , and . PLoS Computational Biology, (2013)The Evolution of Two-Component Systems in Bacteria Reveals Different Strategies for Niche Adaptation., , and . PLoS Computational Biology, (2006)Stochastic Models of Biological Processes., , and . Encyclopedia of Complexity and Systems Science, Springer, (2009)Motifs and modules in cellular signal processing., and . ICASSP, page 4032-4035. IEEE, (2002)A method for achieving complete microbial genomes and improving bins from metagenomics data., , and . PLoS Comput. Biol., (2021)The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism., , , , , , , , and . BMC Bioinformatics, 18 (1): 205:1-205:11 (2017)metaMicrobesOnline: phylogenomic analysis of microbial communities., , , and . Nucleic Acids Research, 41 (Database-Issue): 648-654 (2013)RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics., , , , , , and . Nucleic Acids Research, 40 (Web-Server-Issue): 604-608 (2012)A latent variable model for chemogenomic profiling., , , , and . Bioinformatics, 21 (15): 3286-3293 (2005)