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Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers.

P. Medvedev, S. Pham, M. Chaisson, G. Tesler, and P. Pevzner. RECOMB, volume 6577 of Lecture Notes in Computer Science, page 238-251. Springer, (2011)

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Pavel Nedvedicky University of Stuttgart

A. Laukemann

Dr. Pavel Bashtrykov University of Stuttgart

A. Laukemann

Pavel Denisov University of Stuttgart

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Finding composite regulatory patterns in DNA sequences.E. Eskin, and P. Pevzner. ISMB, page 354-363. (2002)Splicing graphs and EST assembly problem.S. Heber, M. Alekseyev, S. Sze, H. Tang, and P. Pevzner. ISMB, page 181-188. (2002)Session Introduction.B. Moret, W. Miller, P. Pevzner, and D. Sankoff. Pacific Symposium on Biocomputing, page 111-113. (2009)EULER-PCR: Finishing Experiments for Repeat Resolution.Z. Mulyukov, and P. Pevzner. Pacific Symposium on Biocomputing, page 199-210. (2002)Protein Identification via Spectral Networks Analysis.P. Pevzner. APBC, volume 5 of Advances in Bioinformatics and Computational Biology, page 5. Imperial College Press, (2007)Characterization of Multi-Charge Mass Spectra for Peptide Sequencing.K. Chong, K. Ning, H. Leong, and P. Pevzner. APBC, page 109-119. Imperial College Press, London, (2006)To Cut... or Not to Cut (Applications of Comparative Physical Maps in Molecular Evolution).S. Hannenhalli, and P. Pevzner. SODA, page 304-313. ACM/SIAM, (1996)Genome Rearrangements and Sorting by ReversalsV. Bafna, and P. Pevzner. FOCS, page 148-157. IEEE Computer Society, (1993)Colored de Bruijn Graphs and the Genome Halving Problem.M. Alekseyev, and P. Pevzner. IEEE/ACM Trans. Comput. Biology Bioinform., 4 (1): 98-107 (2007)Error correction of high-throughput sequencing datasets with non-uniform coverage.P. Medvedev, E. Scott, B. Kakaradov, and P. Pevzner. Bioinformatics [ISMB/ECCB], 27 (13): 137-141 (2011)