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rapidGSEA: Speeding up gene set enrichment analysis on multi-core CPUs and CUDA-enabled GPUs.

, , and . BMC Bioinformatics, (2016)

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Computing Large-Scale Alignments on a Multi-Cluster., and . CLUSTER, page 38-45. IEEE Computer Society, (2003)SWAPHI-LS: Smith-Waterman Algorithm on Xeon Phi coprocessors for Long DNA Sequences., , , and . CLUSTER, page 257-265. IEEE Computer Society, (2014)CUDA-Accelerated Alignment of Subsequences in Streamed Time Series Data., , and . ICPP, page 10-19. IEEE Computer Society, (2014)Mapping of Hierarchical Parallel Genetic Algorithms for Protein Folding onto Computational Grids., and . IEICE Transactions, 89-D (2): 589-596 (2006)KPROC - An Instruction Systolic Architecture for Parallel Prefix Applications., and . Scalable Computing: Practice and Experience, (2000)Constructing large suffix trees on a computational grid., and . J. Parallel Distrib. Comput., 66 (12): 1512-1523 (2006)Design of a Bit-Serial Floating Point Unit for a Fine Grained Parallel Processor Array., , and . PDPTA, page 255-261. CSREA Press, (2003)An FPGA aligner for short read mapping., , and . FPL, page 511-514. IEEE, (2012)GSWABE: faster GPU-accelerated sequence alignment with optimal alignment retrieval for short DNA sequences., and . Concurrency and Computation: Practice and Experience, 27 (4): 958-972 (2015)Massively Parallel Solutions for Molecular Sequence Analysis., , and . IPDPS, IEEE Computer Society, (2002)