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An Efficient Algorithm for Statistical Multiple Alignment on Arbitrary Phylogenetic Trees., , , and . Journal of Computational Biology, 10 (6): 869-889 (2003)Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Model., , , , and . WABI, volume 2812 of Lecture Notes in Computer Science, page 228-244. Springer, (2003)scrm: efficiently simulating long sequences using the approximated coalescent with recombination., , , and . Bioinformatics, 31 (10): 1680-1682 (2015)Dog as an Outgroup to Human and Mouse.. PLoS Computational Biology, (2007)A nucleotide substitution model with nearest-neighbour interactions., and . ISMB/ECCB (Supplement of Bioinformatics), page 216-223. (2004)Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques., , and . Bioinformatics, 26 (17): 2116-2120 (2010)HMMoC - a compiler for hidden Markov models.. Bioinformatics, 23 (18): 2485-2487 (2007)Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes.. ISMB/ECCB (Supplement of Bioinformatics), page 289-296. (2007)Occlusion-insensitive motion estimation for segmentation.. VCIP, volume 4671 of Proceedings of SPIE, page 573-584. SPIE, (2002)Haplotype matching in large cohorts using the Li and Stephens model.. Bioinformatics, 35 (5): 798-806 (2019)