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Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013.

T. Ohta, S. Pyysalo, R. Rak, A. Rowley, H. Chun, S. Jung, S. Choi, S. Ananiadou, and J. Tsujii. BioNLP@ACL (Shared Task), page 67-75. Association for Computational Linguistics, (2013)

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Sophia Leistner

Sophia Hess University of Stuttgart

Sophia Murr University of Stuttgart

Sophia Gutierrez Beltran University of Stuttgart

Katharina-Sophia Wiegers University of Stuttgart

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Extracting Secondary Bio-Event Arguments with Extraction Constraints.Y. Sasaki, X. Wang, and S. Ananiadou. Computational Intelligence, 27 (4): 702-721 (2011)Discovering robust Embeddings in (DIS)Similarity Space for High-Dimensional Linguistic Features.T. Mu, M. Miwa, J. Tsujii, and S. Ananiadou. Computational Intelligence, 30 (2): 285-315 (2014)Semantically enhanced search system for historical medical archives.P. Thompson, J. Carter, J. McNaught, and S. Ananiadou. Digital Heritage, page 387-390. IEEE, (2015)Boosting drug named entity recognition using an aggregate classifier.I. Korkontzelos, D. Piliouras, A. Dowsey, and S. Ananiadou. Artificial Intelligence in Medicine, 65 (2): 145-153 (2015)Wide coverage biomedical event extraction using multiple partially overlapping corpora.M. Miwa, S. Pyysalo, T. Ohta, and S. Ananiadou. BMC Bioinformatics, (2013)Discovering and visualizing indirect associations between biomedical concepts.Y. Tsuruoka, M. Miwa, K. Hamamoto, J. Tsujii, and S. Ananiadou. Bioinformatics ISMB/ECCB, 27 (13): 111-119 (2011)Learning string similarity measures for gene/protein name dictionary look-up using logistic regression.Y. Tsuruoka, J. McNaught, J. Tsujii, and S. Ananiadou. Bioinformatics, 23 (20): 2768-2774 (2007)Processing biological literature with customizable Web services supporting interoperable formats.R. Rak, R. Batista-Navarro, J. Carter, A. Rowley, and S. Ananiadou. Database, (2014)Recognising Discourse Causality Triggers in the Biomedical Domain.C. Mihaila, and S. Ananiadou. J. Bioinformatics and Computational Biology, (2013)Identification of research hypotheses and new knowledge from scientific literature.M. Shardlow, R. Batista-Navarro, P. Thompson, R. Nawaz, J. McNaught, and S. Ananiadou. BMC Med. Inf. & Decision Making, 18 (1): 46:1-46:13 (2018)