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Graph based fusion of miRNA and mRNA expression data improves clinical outcome prediction in prostate cancer., , , , , , , , and . BMC Bioinformatics, (2011)arrayMagic: two-colour cDNA microarray quality control, preprocessing., , , , and . Bioinformatics, 21 (4): 554-556 (2005)Discrimination of Direct and Indirect Interactions in a Network of Regulatory Effects., , , , , and . Journal of Computational Biology, 14 (9): 1217-1228 (2007)Variance stabilization applied to microarray data calibration and to the quantification of differential expression., , , , and . ISMB, page 96-104. (2002)Experimental design and data analysis of Ago-RIP-Seq experiments for the identification of microRNA targets., , , and . Briefings in Bioinformatics, 19 (5): 918-929 (2018)Large scale statistical inference of signaling pathways from RNAi and microarray data., , , , and . BMC Bioinformatics, (2007)pathClass: an R-package for integration of pathway knowledge into support vector machines for biomarker discovery., , , and . Bioinformatics, 27 (10): 1442-1443 (2011)Predicting pathway membership via domain signatures., , , , and . Bioinformatics, 24 (19): 2137-2142 (2008)Identification of aberrant chromosomal regions from gene expression microarray studies applied to human breast cancer., , , , , and . Bioinformatics, 23 (17): 2273-2280 (2007)Integration of pathway knowledge into a reweighted recursive feature elimination approach for risk stratification of cancer patients., , , , , , , and . Bioinformatics, 26 (17): 2136-2144 (2010)