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A fragile metabolic network adapted for cooperation in the symbiotic bacterium Buchnera aphidicola., , , , , and . BMC Systems Biology, (2009)The Mycobacterium tuberculosis regulatory network and hypoxia., , , , , , , , , and 35 other author(s). Nature, 499 (7457): 178-183 (2013)Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome., , , , , , , , , and 7 other author(s). PLoS Computational Biology, (2012)ATLAS (Automatic Tool for Local Assembly Structures) - a comprehensive infrastructure for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data., , , , , , , , and . PeerJ PrePrints, (2017)Interpreting Expression Data with Metabolic Flux Models: Predicting Mycobacterium tuberculosis Mycolic Acid Production., , , , , , , , , and . PLoS Computational Biology, (2009)What BioPAX Communicates and how to extend OWL to help it., , and . OWLED, volume 216 of CEUR Workshop Proceedings, CEUR-WS.org, (2006)Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models., , , , , , , , , and 5 other author(s). PLoS Computational Biology, (2015)Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM., , , , , and . PLoS Computational Biology, (2013)