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Minimizing Phylogenetic Number to find Good Evolutionary Trees.

L. Goldberg, P. Goldberg, C. Phillips, E. Sweedyk, and T. Warnow. CPM, volume 937 of Lecture Notes in Computer Science, page 102-127. Springer, (1995)

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The Effect of the Guide Tree on Multiple Sequence Alignments and Subsequent Phylogenetic Analysis.S. Nelesen, K. Liu, D. Zhao, C. Linder, and T. Warnow. Pacific Symposium on Biocomputing, page 25-36. World Scientific, (2008)Absolute convergence: true trees from short sequences.T. Warnow, B. Moret, and K. John. SODA, page 186-195. ACM/SIAM, (2001)Determining the Evolutionary Tree.S. Kannan, E. Lawler, and T. Warnow. SODA, page 475-484. SIAM, (1990)Triangulating Vertex Colored Graphs.F. McMorris, T. Warnow, and T. Wimer. SODA, page 120-127. ACM/SIAM, (1993)Computing the Local Consensus of Trees.S. Kannan, T. Warnow, and S. Yooseph. SODA, page 68-77. ACM/SIAM, (1995)Triangulating Vertex-Colored Graphs.F. McMorris, T. Warnow, and T. Wimer. SIAM J. Discrete Math., 7 (2): 296-306 (1994)Barking Up The Wrong Treelength: The Impact of Gap Penalty on Alignment and Tree Accuracy.K. Liu, S. Nelesen, S. Raghavan, C. Linder, and T. Warnow. IEEE/ACM Trans. Comput. Biology Bioinform., 6 (1): 7-21 (2009)The hardness of perfect phylogeny, feasible register assignment and other problems on thin colored graphs.H. Bodlaender, M. Fellows, M. Hallett, T. Wareham, and T. Warnow. Theor. Comput. Sci., 244 (1-2): 167-188 (2000)OCTAL: Optimal Completion of gene trees in polynomial time.S. Christensen, E. Molloy, P. Vachaspati, and T. Warnow. Algorithms for Molecular Biology, 13 (1): 6:1-6:18 (2018)An experimental study of Quartets MaxCut and other supertree methods.M. Swenson, R. Suri, C. Linder, and T. Warnow. Algorithms for Molecular Biology, (2011)