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Protein flexibility and electrostatic interactions., , and . IBM Journal of Research and Development, 45 (3): 499-512 (2001)Protein structure prediction via combinatorial assembly of sub-structural units., , , and . ISMB (Supplement of Bioinformatics), page 158-168. (2003)Application of 1-Aminocyclohexane Carboxylic Acid to Protein Nanostructure Computer Design., , , , and . Journal of Chemical Information and Modeling, 48 (2): 333-343 (2008)A simulation strategy for the atomistic modeling of flexible molecules covalently tethered to rigid surfaces: Application to peptides., , , and . Journal of Computational Chemistry, 32 (4): 607-619 (2011)CCRXP: exploring clusters of conserved residues in protein structures., , , , and . Nucleic Acids Research, 38 (Web-Server-Issue): 398-401 (2010)PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes., , , , and . Nucleic Acids Research, 42 (Webserver-Issue): 285-289 (2014)Recognition of Binding Patterns Common to a Set of Protein Structures., , , and . RECOMB, volume 3500 of Lecture Notes in Computer Science, page 440-455. Springer, (2005)The Mechanism of Ubiquitination in the Cullin-RING E3 Ligase Machinery: Conformational Control of Substrate Orientation., and . PLoS Computational Biology, (2009)Structural similarity of genetically interacting proteins., , , , , and . BMC Systems Biology, (2008)The Role of Response Elements Organization in Transcription Factor Selectivity: The IFN-β Enhanceosome Example., and . PLoS Computational Biology, (2011)