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Multiple Testing for Gene Expression Data: An Investigation of Null Distributions with Consequences for the Permutation Test., and . METMBS, page 3-9. CSREA Press, (2003)G-NEST: a gene neighborhood scoring tool to identify co-conserved, co-expressed genes., , , , , , and . BMC Bioinformatics, (2012)Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes., , , , , , , and . PLoS Computational Biology, (2015)Unboxing cluster heatmaps., , , and . BMC Bioinformatics, 18 (S-2): 63:1-63:15 (2017)The UCSC Archaeal Genome Browser., , , , and . Nucleic Acids Research, 34 (Database-Issue): 407-410 (2006)MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome., , and . Bioinformatics, 31 (20): 3368-3370 (2015)PhylOTU: A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data., , , , , , , and . PLoS Computational Biology, (2011)PHAST and RPHAST: phylogenetic analysis with space/time models., , and . Briefings in Bioinformatics, 12 (1): 41-51 (2011)Integrating Diverse Datasets Improves Developmental Enhancer Prediction., , , , , , , and . PLoS Computational Biology, (2014)Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource., , , , , and . BMC Bioinformatics, (2012)