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Targeted Mollified Impulse: A Multiscale Stochastic Integrator for Long Molecular Dynamics Simulations.

, and . Multiscale Modeling & Simulation, 2 (1): 1-21 (2003)

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MDL, A Domain-Specific Language for Molecular Dynamics., , and . Annual Simulation Symposium, page 256-266. IEEE Computer Society, (2007)AWE-WQ: Fast-Forwarding Molecular Dynamics Using the Accelerated Weighted Ensemble., , , , , , and . Journal of Chemical Information and Modeling, 54 (10): 3033-3043 (2014)PROTOMOL: A Molecular Dynamics Research Framework for Algorithmic Development., , and . International Conference on Computational Science, volume 2659 of Lecture Notes in Computer Science, page 50-59. Springer, (2003)Folding proteins at 500 ns/hour with Work Queue., , , , , , and . eScience, page 1-8. IEEE Computer Society, (2012)Verlet-I/R-RESPA/Impulse is Limited by Nonlinear Instabilities., , and . SIAM J. Scientific Computing, 24 (6): 1951-1973 (2003)Parallel multigrid summation for the N-body problem., , and . J. Parallel Distrib. Comput., 65 (8): 949-962 (2005)Multiscale Dynamics of Macromolecules Using Normal Mode Langevin., , and . Pacific Symposium on Biocomputing, page 240-251. World Scientific Publishing, (2010)Cytoprophet: a Cytoscape plug-in for protein and domain interaction networks inference., , , and . Bioinformatics, 24 (19): 2265-2266 (2008)From Genes to Organisms Via the Cell: A Problem-Solving Environment for Multicellular Development., , , , , , , , , and . Computing in Science and Engineering, 9 (4): 50-60 (2007)A Hybrid Discrete-Continuum Model for 3-D Skeletogenesis of the Vertebrate Limb., , , , , and . ACRI, volume 3305 of Lecture Notes in Computer Science, page 543-552. Springer, (2004)