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A general probabilistic model of the PCR process., , , , , , and . Applied Mathematics and Computation, 182 (1): 232-243 (2006)Validation and Estimation of Parameters for a General Probabilistic Model of the PCR Process., , , , , , and . Journal of Computational Biology, 14 (1): 97-112 (2007)Performance comparison of generalized born and Poisson methods in the calculation of electrostatic solvation energies for protein structures., , , , , and . Journal of Computational Chemistry, 25 (2): 265-284 (2004)The Amber biomolecular simulation programs., , , , , , , , , and . Journal of Computational Chemistry, 26 (16): 1668-1688 (2005)H++: a server for estimating pKas and adding missing hydrogens to macromolecules., , , , , and . Nucleic Acids Research, 33 (Web-Server-Issue): 368-371 (2005)Effective Born radii in the generalized Born approximation: The importance of being perfect., , and . Journal of Computational Chemistry, 23 (14): 1297-1304 (2002)An N log N approximation based on the natural organization of biomolecules for speeding up the computation of long range interactions., and . Journal of Computational Chemistry, 31 (4): 691-706 (2010)H++ 3.0: automating pK prediction and the preparation of biomolecular structures for atomistic molecular modeling and simulations., , and . Nucleic Acids Research, 40 (Web-Server-Issue): 537-541 (2012)Analysis of Basic Clustering Algorithms for Numerical Estimation of Statistical Averages in Biomolecules., and . Journal of Computational Biology, 15 (2): 165-184 (2008)Multiscale Approximation with Graphical Processing Units for Multiplicative Speedup in Molecular Dynamics., , , and . BCB, page 453-462. ACM, (2016)