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Clustering with Overlap for Genetic Interaction Networks via Local Search Optimization.

J. Whitney, J. Koh, M. Costanzo, G. Brown, C. Boone, and M. Brudno. WABI, volume 6833 of Lecture Notes in Computer Science, page 326-338. Springer, (2011)

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Michael Böhm

Michael Funk

Hon. -Prof. Dr. -Ing. Michael Bauer University of Stuttgart

Dr. Michael Wachowsky University of Stuttgart

Dr. phil. Michael Nerurkar University of Stuttgart

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PROBCONS: Probabilistic Consistency-Based Multiple Alignment of Amino Acid Sequences.C. Do, M. Brudno, and S. Batzoglou. AAAI, page 703-708. AAAI Press / The MIT Press, (2004)The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences.M. Brudno, R. Steinkamp, and B. Morgenstern. Nucleic Acids Research, 32 (Web-Server-Issue): 41-44 (2004)PhenoLines: Phenotype Comparison Visualizations for Disease Subtyping via Topic Models.M. Glueck, M. Naeini, F. Doshi-Velez, F. Chevalier, A. Khan, D. Wigdor, and M. Brudno. IEEE Trans. Vis. Comput. Graph., 24 (1): 371-381 (2018)PhenoStacks: Cross-Sectional Cohort Phenotype Comparison Visualizations.M. Glueck, A. Gvozdik, F. Chevalier, A. Khan, M. Brudno, and D. Wigdor. IEEE Trans. Vis. Comput. Graph., 23 (1): 191-200 (2017)Phylo-VISTA: interactive visualization of multiple DNA sequence alignments.N. Shah, O. Couronne, L. Pennacchio, M. Brudno, S. Batzoglou, E. Bethel, E. Rubin, B. Hamann, and I. Dubchak. Bioinformatics, 20 (5): 636-643 (2004)PRISM: Pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants.Y. Jiang, Y. Wang, and M. Brudno. Bioinformatics, 28 (20): 2576-2583 (2012)Cell-free DNA fragment-size distribution analysis for non-invasive prenatal CNV prediction.A. Arbabi, L. Rampásek, and M. Brudno. Bioinformatics, 32 (11): 1662-1669 (2016)Prediction of Cardiac Arrest from Physiological Signals in the Pediatric ICU.S. Tonekaboni, M. Mazwi, P. Laussen, D. Eytan, R. Greer, S. Goodfellow, A. Goodwin, M. Brudno, and A. Goldenberg. MLHC, volume 85 of Proceedings of Machine Learning Research, page 534-550. PMLR, (2018)A robust framework for detecting structural variations in a genome.S. Lee, E. Cheran, and M. Brudno. ISMB, page 59-67. (2008)The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data.S. Köhler, S. Doelken, C. Mungall, S. Bauer, H. Firth, I. Bailleul-Forestier, G. Black, D. Brown, M. Brudno, J. Campbell and 37 other author(s). Nucleic Acids Research, 42 (Database-Issue): 966-974 (2014)