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RedMD - Reduced molecular dynamics package., , , and . Journal of Computational Chemistry, 30 (14): 2364-2373 (2009)Brownian dynamics simulations on CPU and GPU with BD_BOX., , and . Journal of Computational Chemistry, 32 (12): 2734-2744 (2011)Correction: Extracellular loops of BtuB facilitate transport of vitamin B12 through the outer membrane of E. coli., and . PLoS Comput. Biol., (2021)Extracellular loops of BtuB facilitate transport of vitamin B12 through the outer membrane of E. coli., and . PLoS Comput. Biol., (2020)Dependency Map of Proteins in the Small Ribosomal Subunit., , and . PLoS Computational Biology, (2006)Understanding the Origins of Bacterial Resistance to Aminoglycosides through Molecular Dynamics Mutational Study of the Ribosomal A-Site., , and . PLoS Computational Biology, (2011)Coarse-grained force field for the nucleosome from self-consistent multiscaling., , , , , and . Journal of Computational Chemistry, 29 (9): 1429-1439 (2008)Search for Novel Aminoglycosides by Combining Fragment-Based Virtual Screening and 3D-QSAR Scoring., and . Journal of Chemical Information and Modeling, 49 (2): 390-400 (2009)Genetic Algorithm Optimization of Force Field Parameters: Application to a Coarse-Grained Model of RNA., , , and . EvoBio, volume 6623 of Lecture Notes in Computer Science, page 147-152. Springer, (2011)The Poisson-Boltzmann model for tRNA: Assessment of the calculation set-up and ionic concentration cutoff., , and . Journal of Computational Chemistry, 29 (12): 1970-1981 (2008)