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Comparison of Methods for Meta-dimensional Data Analysis Using in Silico and Biological Data Sets.

E. Holzinger, S. Dudek, A. Frase, B. Fridley, P. Chalise, and M. Ritchie. EvoBIO, volume 7246 of Lecture Notes in Computer Science, page 134-143. Springer, (2012)

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M. Nudischer

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Evaluation of Parameter Contribution to Neural Network Size and Fitness in ATHENA for Genetic Analysis.R. Li, E. Holzinger, S. Dudek, and M. Ritchie. GPTP, page 211-224. Springer, (2013)Predicting censored survival data based on the interactions between meta-dimensional omics data in breast cancer.D. Kim, R. Li, S. Dudek, and M. Ritchie. Journal of Biomedical Informatics, (2015)Next-Generation Analysis of Cataracts: Determining Knowledge Driven Gene-Gene Interactions Using Biofilter, and Gene-Environment Interactions Using the PhenX Toolkit.S. Pendergrass, S. Verma, E. Holzinger, C. Moore, J. Wallace, S. Dudek, W. Huggins, T. Kitchner, C. Waudby, R. Berg and 2 other author(s). Pacific Symposium on Biocomputing, page 147-158. World Scientific Publishing, (2013)Using knowledge-driven genomic interactions for multi-omics data analysis: metadimensional models for predicting clinical outcomes in ovarian carcinoma.D. Kim, R. Li, A. Lucas, S. Verma, S. Dudek, and M. Ritchie. JAMIA, 24 (3): 577-587 (2017)Can Neural Network Constraints in GP Provide Power to Detect Genes Associated with Human Disease?.W. Bush, A. Motsinger, S. Dudek, and M. Ritchie. EvoWorkshops, volume 3449 of Lecture Notes in Computer Science, page 44-53. Springer, (2005)Understanding the Evolutionary Process of Grammatical Evolution Neural Networks for Feature Selection in Genetic Epidemiology.A. Motsinger, D. Reif, S. Dudek, and M. Ritchie. CIBCB, page 1-8. IEEE, (2006)Collective feature selection to identify crucial epistatic variants.S. Verma, A. Lucas, X. Zhang, Y. Veturi, S. Dudek, B. Li, R. Li, R. Urbanowicz, J. Moore, D. Kim and 1 other author(s). BioData Min., 11 (1): 5:1-5:22 (2018)Biofilter: A Knowledge-Integration System for the Multi-Locus Analysis of Genome-Wide Association Studies.W. Bush, S. Dudek, and M. Ritchie. Pacific Symposium on Biocomputing, page 368-379. (2009)Parallel multifactor dimensionality reduction: a tool for the large-scale analysis of gene-gene interactions.W. Bush, S. Dudek, and M. Ritchie. Bioinformatics, 22 (17): 2173-2174 (2006)Grammatical Evolution of Neural Networks for Discovering Epistasis among Quantitative Trait Loci.S. Turner, S. Dudek, and M. Ritchie. EvoBIO, volume 6023 of Lecture Notes in Computer Science, page 86-97. Springer, (2010)