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An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action

H. Anzt, F. Bach, S. Druskat, F. Löffler, A. Loewe, B. Renard, G. Seemann, A. Struck, E. Achhammer, P. Aggarwal, F. Appel, M. Bader, L. Brusch, C. Busse, G. Chourdakis, P. Dabrowski, P. Ebert, B. Flemisch, S. Friedl, B. Fritzsch, M. Funk, V. Gast, F. Goth, J. Grad, J. Hegewald, S. Hermann, F. Hohmann, S. Janosch, D. Kutra, J. Linxweiler, T. Muth, W. Peters-Kottig, F. Rack, F. Raters, S. Rave, G. Reina, M. Reißig, T. Ropinski, J. Schaarschmidt, H. Seibold, J. Thiele, B. Uekermann, S. Unger, and R. Weeber. F1000Research, (January 2021)
DOI: 10.12688/f1000research.23224.2

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Univ. -Prof. Dr. -Ing. Bernhard Mitschang University of Stuttgart

Privacy in Connected Vehicles: Perspectives of Drivers and Car ManufacturersA. Fieschi, Y. Li, P. Hirmer, C. Stach, and B. Mitschang. Service-Oriented Computing : 17th Symposium and Summer School, SummerSOC 2023, Heraklion, Crete, Greece, June 25 – July 1, 2023, Revised Selected Papers, 1847, page 59-68. Cham, Springer, (2023)

Bernhard Putzer University of Stuttgart

Dr. rer. nat. Bernhard Schulz University of Stuttgart

Bernhard Schopfer University of Stuttgart

Prof. Dr. Bernhard Hauer University of Stuttgart

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Confidence-based Somatic Mutation Evaluation and Prioritization.M. Löwer, B. Renard, J. de Graaf, M. Wagner, C. Paret, C. Kneip, Ö. Türeci, M. Diken, C. Britten, S. Kreiter and 3 other author(s). PLoS Computational Biology, (2012)NITPICK: peak identification for mass spectrometry data.B. Renard, M. Kirchner, H. Steen, J. Steen, and F. Hamprecht. BMC Bioinformatics, (2008)SuRankCo: supervised ranking of contigs in de novo assemblies.M. Kuhring, P. Dabrowski, V. Piro, A. Nitsche, and B. Renard. BMC Bioinformatics, (2015)PAIPline: pathogen identification in metagenomic and clinical next generation sequencing samples.A. Andrusch, P. Dabrowski, J. Klenner, S. Tausch, C. Kohl, A. Osman, B. Renard, and A. Nitsche. Bioinformatics, 34 (17): i715-i721 (2018)Pipasic: similarity and expression correction for strain-level identification and quantification in metaproteomics.A. Penzlin, M. Lindner, J. Doellinger, P. Dabrowski, A. Nitsche, and B. Renard. Bioinformatics, 30 (12): 149-156 (2014)LiveKraken--real-time metagenomic classification of illumina data.S. Tausch, B. Strauch, A. Andrusch, T. Loka, M. Lindner, A. Nitsche, and B. Renard. Bioinformatics, 34 (21): 3750-3752 (2018)rapmad: Robust Analysis of Peptide Microarray Data.B. Renard, M. Löwer, Y. Kuhne, U. Reimer, A. Rothermel, Ö. Türeci, J. Castle, and U. Sahin. BMC Bioinformatics, (2011)HiLive: real-time mapping of illumina reads while sequencing.M. Lindner, B. Strauch, J. Schulze, S. Tausch, P. Dabrowski, A. Nitsche, and B. Renard. Bioinformatics, 33 (6): 917 (2017)Detecting horizontal gene transfer by mapping sequencing reads across species boundaries.K. Trappe, T. Marschall, and B. Renard. Bioinformatics, 32 (17): 595-604 (2016)GIIRA - RNA-Seq driven gene finding incorporating ambiguous reads.F. Zickmann, M. Lindner, and B. Renard. Bioinformatics, 30 (5): 606-613 (2014)