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Major copy proportion analysis of tumor samples using SNP arrays., , , , , , and . BMC Bioinformatics, (2008)GATK PathSeq: a customizable computational tool for the discovery and identification of microbial sequences in libraries from eukaryotic hosts., , , , , , and . Bioinformatics, 34 (24): 4287-4289 (2018)Analyses of non-coding somatic drivers in 2,658 cancer whole genomes., , , , , , , , , and 179 other author(s). Nat., 578 (7793): 102-111 (2020)Inferring Loss-of-Heterozygosity from Unpaired Tumors Using High-Density Oligonucleotide SNP Arrays., , , , , , , , , and 6 other author(s). PLoS Computational Biology, (2006)Genomic basis for RNA alterations in cancer., , , , , , , , , and 64 other author(s). Nat., 578 (7793): 129-136 (2020)Correction: Inferring Loss-of-Heterozygosity from Unpaired Tumors Using High-Density Oligonucleotide SNP Arrays., , , , , , , , , and 6 other author(s). PLoS Computational Biology, (2007)Allele-Specific Amplification in Cancer Revealed by SNP Array Analysis., , , , , , , and . PLoS Computational Biology, (2005)VariantBam: filtering and profiling of next-generational sequencing data using region-specific rules., , , and . Bioinform., 32 (13): 2029-2031 (2016)