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On the combinatorics of sparsification., and . Algorithms for Molecular Biology, (2012)Inverse folding of RNA pseudoknot structures., , and . Algorithms for Molecular Biology, (2010)Elements of a theory of simulation II: sequential dynamical systems., , and . Applied Mathematics and Computation, 107 (2-3): 121-136 (2000)Combinatorial Landscapes., and . SIAM Review, 44 (1): 3-54 (2002)Bio-molecular Shapes and Algebraic Structures., and . Computers & Chemistry, 20 (1): 85-94 (1996)A topological framework for signed permutations., and . Discrete Mathematics, 340 (9): 2161-2182 (2017)Loops in Canonical RNA Pseudoknot Structures., , and . Journal of Computational Biology, 18 (12): 1793-1806 (2011)Reduction of Discrete Dynamical Systems over Graphs., and . Advances in Complex Systems, 7 (1): 1-20 (2004)Combinatorics of sequential dynamical systems.. Discrete Mathematics, 308 (4): 514-528 (2008)A Boltzmann Sampler for 1-Pairs with Double Filtration., , , and . Journal of Computational Biology, 26 (3): 173-192 (2019)