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Boosting the FM-Index on the GPU: Effective Techniques to Mitigate Random Memory Access.

, , , , and . IEEE/ACM Trans. Comput. Biology Bioinform., 12 (5): 1048-1059 (2015)

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Improving the Execution Performance of FreeSurfer - A New Scheduled Pipeline Scheme for Optimizing the Use of CPU and GPU Resources., , , , , and . Neuroinformatics, 12 (3): 413-421 (2014)A History-Based Resource Manager for Genome Analysis Workflows Applications on Clusters with Heterogeneous Nodes., , , , and . International Journal of Parallel Programming, 47 (2): 317-342 (2019)Embedded real-time stereo estimation via Semi-Global Matching on the GPU., , , , , and . CoRR, (2016)Automatic Performance Analysis of Master/Worker PVM Applications with Kpi., , and . PVM/MPI, volume 1908 of Lecture Notes in Computer Science, page 47-55. Springer, (2000)Thread-cooperative, bit-parallel computation of levenshtein distance on GPU., , , , and . ICS, page 103-112. ACM, (2014)n-step FM-Index for Faster Pattern Matching., , , and . ICCS, volume 18 of Procedia Computer Science, page 70-79. Elsevier, (2013)A Data-Aware MultiWorkflow Cluster Scheduler., , , and . COMPLEXIS, page 95-102. SciTePress, (2016)Paving the way for Large-Scale Combinatorial Auctions., , , , and . AAMAS, page 1855-1856. ACM, (2015)FM-Index on GPU: A Cooperative Scheme to Reduce Memory Footprint., , , , and . ISPA, page 1-9. IEEE Computer Society, (2014)Embedded Real-time Stereo Estimation via Semi-Global Matching on the GPU., , , , , and . ICCS, volume 80 of Procedia Computer Science, page 143-153. Elsevier, (2016)