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Gene Networks Viewed through Two Models.

, , , , and . BICoB, volume 5462 of Lecture Notes in Computer Science, page 54-66. Springer, (2009)

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Cell System Ontology: Representation for Modeling, Visualizing, and Simulating Biological Pathways., , , and . In Silico Biology, 7 (6): 623-638 (2007)Poster: Comprehensive pharmacogenomic pathway screening by data assimilation., , , , and . ICCABS, page 246. IEEE Computer Society, (2011)Parameter Estimation of In Silico Biological Pathways with Particle Filtering Towards a Petascale Computing., , , , and . Pacific Symposium on Biocomputing, page 227-238. (2009)An efficient method of exploring simulation models by assimilating literature and biological observational data., , , , and . Biosystems, (2014)CSML2SBML: A novel tool for converting quantitative biological pathway models from CSML into SBML., , , , and . Biosystems, (2014)AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction., , , , , , , and . BMC Bioinformatics, (2007)An efficient grid layout algorithm for biological networks utilizing various biological attributes., , , , and . BMC Bioinformatics, (2007)Fast grid layout algorithm for biological networks with sweep calculation., , and . Bioinformatics, 24 (12): 1433-1441 (2008)Hybrid Functional Petri Net with Extension for Dynamic Pathway Modeling., , , and . Modeling in Systems Biology, The Petri Net Approach, volume 16 of Computational Biology, Springer, (2016)Time-dependent structural transformation analysis to high-level Petri net model with active state transition diagram., , , and . BMC Systems Biology, (2010)