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Reduction of a detailed biological signaling model.. ICCS, volume 1 of Procedia Computer Science, page 987-996. Elsevier, (2010)Simulating Organogenesis in COMSOL: Image-based Modeling., , , and . CoRR, (2014)Computational modelling of bovine ovarian follicle development., and . BMC Systems Biology, (2013)Branch Mode Selection during Early Lung Development., , and . PLoS Computational Biology, (2012)Inferring Biological Mechanisms by Data-Based Mathematical Modelling: Compartment-Specific Gene Activation during Sporulation in Bacillus subtilis as a Test Case.. Adv. Bioinformatics, (2011)A Model of the Spatio-temporal Dynamics of Drosophila Eye Disc Development., , , , , and . PLoS Computational Biology, (2016)The Mechanistic Basis of Compartmentalized Gene Expression in Bacillus subtilis.. Natural Computing, 4 (4): 325-338 (2005)LBIBCell: a cell-based simulation environment for morphogenetic problems., , and . Bioinformatics, 31 (14): 2340-2347 (2015)MOCCASIN: converting MATLAB ODE models to SBML., , , , , and . Bioinformatics, 32 (12): 1905-1906 (2016)Dynamic Image-Based Modelling of Kidney Branching Morphogenesis., , , and . CMSB, volume 8130 of Lecture Notes in Computer Science, page 106-119. Springer, (2013)