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MDAT- Aligning multiple domain arrangements., , and . BMC Bioinformatics, (2015)Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package., , , , and . Bioinformatics, 29 (9): 1112-1119 (2013)SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments., , , , , , and . Nucleic Acids Research, 42 (Webserver-Issue): 356-360 (2014)STRIKE: evaluation of protein MSAs using a single 3D structure., , , and . Bioinformatics, 27 (24): 3385-3391 (2011)DOGMA: domain-based transcriptome and proteome quality assessment., , , and . Bioinformatics, 32 (17): 2577-2581 (2016)Domain similarity based orthology detection., , , and . BMC Bioinformatics, (2015)Upcoming challenges for multiple sequence alignment methods in the high-throughput era., and . Bioinformatics, 25 (19): 2455-2465 (2009)Epistasis as the primary factor in molecular evolution., , , , and . Nature, 490 (7421): 535-538 (2012)Multiple sequence alignment modeling: methods and applications., , , , , , and . Briefings in Bioinformatics, 17 (6): 1009-1023 (2016)Enhancing the Scalability of Consistency-based Progressive Multiple Sequences Alignment Applications., , , , , and . IPDPS, page 71-82. IEEE Computer Society, (2012)