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Improved sensitivity of profile searches through the use of sequence weights and gap excision., , and . Computer Applications in the Biosciences, 10 (1): 19-29 (1994)Classification multi-étiquettes pour l'alignement multiple de séquences protéiques., , , and . EGC, volume RNTI-E-24 of Revue des Nouvelles Technologies de l'Information, page 431-436. Hermann-Éditions, (2013)Ballast: Blast post-processing based on locally conserved segments., , and . Bioinformatics, 16 (9): 750-759 (2000)BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations., , , and . Nucleic Acids Research, 29 (1): 323-326 (2001)A new protein linear motif benchmark for multiple sequence alignment software., , , , and . BMC Bioinformatics, (2008)PipeAlign: a new toolkit for protein family analysis., , , , , , , , , and 6 other author(s). Nucleic Acids Research, 31 (13): 3829-3832 (2003)Clustal W and Clustal X version 2.0., , , , , , , , , and 3 other author(s). Bioinformatics, 23 (21): 2947-2948 (2007)RASCAL: Rapid Scanning and Correction of Multiple Sequence Alignments., , and . Bioinformatics, 19 (9): 1155-1161 (2003)MAGOS: multiple alignment and modelling server., , , , , , , , and . Bioinformatics, 22 (17): 2164-2165 (2006)Valid: Validation of Protein Sequence Quality Based on Multiple Alignment Data., , , , and . J. Bioinformatics and Computational Biology, 3 (4): 929-948 (2005)