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Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.

E. Rheinbay, M. Nielsen, F. Abascal, J. Wala, O. Shapira, G. Tiao, H. Hornshøj, J. Hess, R. Juul, Z. Lin, L. Feuerbach, R. Sabarinathan, T. Madsen, J. Kim, L. Mularoni, S. Shuai, A. Lanzós, C. Herrmann, Y. Maruvka, C. Shen, S. Amin, P. Bandopadhayay, J. Bertl, K. Boroevich, J. Busanovich, J. Carlevaro-Fita, D. Chakravarty, C. Chan, D. Craft, P. Dhingra, K. Diamanti, N. Fonseca, A. Gonzalez-Perez, Q. Guo, M. Hamilton, N. Haradhvala, C. Hong, K. Isaev, T. Johnson, M. Juul, A. Kahles, A. Kahraman, Y. Kim, J. Komorowski, K. Kumar, S. Kumar, D. Lee, K. Lehmann, Y. Li, E. Liu, L. Lochovsky, K. Park, O. Pich, N. Roberts, G. Saksena, S. Schumacher, N. Sidiropoulos, L. Sieverling, N. Sinnott-Armstrong, C. Stewart, D. Tamborero, J. Tubio, H. Umer, L. Uusküla-Reimand, C. Wadelius, L. Wadi, X. Yao, C. Zhang, J. Zhang, J. Haber, A. Hobolth, M. Imielinski, M. Kellis, M. Lawrence, C. von Mering, H. Nakagawa, B. Raphael, M. Rubin, C. Sander, L. Stein, J. Stuart, T. Tsunoda, D. Wheeler, R. Johnson, J. Reimand, M. Gerstein, E. Khurana, P. Campbell, N. López-Bigas, G. Bader, J. Barenboim, R. Beroukhim, S. Brunak, K. Chen, J. Choi, J. Deu-Pons, J. Fink, J. Frigola, C. Passerini, D. Garsed, G. Getz, I. Gut, D. Haan, A. Harmanci, M. Helmy, E. Hodzic, J. Izarzugaza, J. Kim, J. Korbel, E. Larsson, S. Li, X. Li, S. Lou, K. Marchal, I. Martincorena, A. Martínez-Fundichely, P. McGillivray, W. Meyerson, F. Muiños, M. Paczkowska, K. Park, J. Pedersen, T. Pons, S. Pulido-Tamayo, I. Reyes-Salazar, M. Reyna, C. Rubio-Perez, S. Sahinalp, L. Salichos, M. Shackleton, R. Shrestha, A. Valencia, M. Vazquez, L. Verbeke, J. Wang, J. Warrell, S. Waszak, J. Weischenfeldt, G. Wu, J. Yu, X. Zhang, Y. Zhang, Z. Zhao, L. Zou, K. Akdemir, E. Alvarez, A. Baez-Ortega, P. Boutros, D. Bowtell, B. Brors, K. Burns, K. Chan, I. Cortés-Ciriano, A. Dueso-Barroso, A. Dunford, P. Edwards, X. Estivill, D. Etemadmoghadam, M. Frenkel-Morgenstern, D. Gordenin, B. Hutter, D. Jones, Y. Ju, M. Kazanov, L. Klimczak, Y. Koh, E. Lee, J. Lee, A. Lynch, G. MacIntyre, F. Markowetz, M. Meyerson, S. Miyano, F. Navarro, S. Ossowski, P. Park, J. Pearson, M. Puiggròs, K. Rippe, S. Roberts, B. Rodriguez-Martin, R. Scully, D. Torrents, I. Villasante, N. Waddell, J. Wala, L. Yang, S. Yoon, and J. Zamora. Nat., 578 (7793): 102-111 (2020)

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HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants.L. Ward, and M. Kellis. Nucleic Acids Research, 40 (Database-Issue): 930-934 (2012)RANGER-DTL 2.0: rigorous reconstruction of gene-family evolution by duplication, transfer and loss.M. Bansal, M. Kellis, M. Kordi, and S. Kundu. Bioinformatics, 34 (18): 3214-3216 (2018)ncdDetect2: improved models of the site-specific mutation rate in cancer and driver detection with robust significance evaluation.M. Juul, T. Madsen, Q. Guo, J. Bertl, A. Hobolth, M. Kellis, and J. Pedersen. Bioinformatics, 35 (2): 189-199 (2019)Network Infusion to Infer Information Sources in Networks.S. Feizi, M. Médard, G. Quon, M. Kellis, and K. Duffy. CoRR, (2016)Comparative analysis of metazoan chromatin organization Open.J. Ho, Y. Jung, T. Liu, B. Alver, S. Lee, K. Ikegami, K. Sohn, A. Minoda, M. Tolstorukov, A. Appert and 68 other author(s). Nature, 512 (7515): 449-452 (2014)Preface: RECOMB/ISCB Systems Biology, Regulatory Genomics, and DREAM 2014 Special Issue.A. Califano, M. Kellis, and G. Stolovitzky. Journal of Computational Biology, 22 (4): 251-252 (2015)A latent topic model for mining heterogenous non-randomly missing electronic health records data.Y. Li, and M. Kellis. CoRR, (2018)Causal Mediation Analysis Leveraging Multiple Types of Summary Statistics Data.Y. Park, A. Sarkar, K. Nguyen, and M. Kellis. CoRR, (2019)Comparative analysis of regulatory information and circuits across distant species Open.A. Boyle, C. Araya, C. Brdlik, P. Cayting, C. Cheng, Y. Cheng, K. Gardner, L. Hillier, J. Janette, L. Jiang and 30 other author(s). Nature, 512 (7515): 453-456 (2014)Preface: RECOMB Systems Biology, Regulatory Genomics, and DREAM 2012 Special Issue.A. Califano, M. Kellis, and G. Stolovitzky. Journal of Computational Biology, 20 (5): 373-374 (2013)

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Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.

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copydeleteadd this publication to your clipboardcommunity posthistory of this postURLDOIBibTeXEndNoteAPAChicagoDIN 1505HarvardMSOffice XML Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.

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Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.