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The Ruby UCSC API: accessing the UCSC genome database using Ruby., , , , and . BMC Bioinformatics, (2012)Community-driven development for computational biology at Sprints, Hackathons and Codefests., , , , , , , , , and 18 other author(s). BMC Bioinformatics, 15 (S-14): S7 (2014)Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics., , , , , , , , , and 7 other author(s). Bioinformatics, 28 (7): 1035-1037 (2012)Pipengine: an ultra light YAML-based pipeline execution engine., and . J. Open Source Software, 2 (16): 341 (2017)Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments., , , and . Source Code for Biology and Medicine, (2012)miRiadne: a web tool for consistent integration of miRNA nomenclature., , , , , and . Nucleic Acids Research, 43 (Webserver-Issue): W487-W492 (2015)The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows., , , , , , , , , and 47 other author(s). J. Biomedical Semantics, (2010)RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes., , , , , , , , and . Nucleic Acids Research, 38 (Web-Server-Issue): 262-267 (2010)BioRuby: bioinformatics software for the Ruby programming language., , , , , and . Bioinformatics, 26 (20): 2617-2619 (2010)BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains., , , , , , , , , and 20 other author(s). J. Biomedical Semantics, (2014)