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Signature, a web server for taxonomic characterization of sequence samples using signature genes., , , and . Nucleic Acids Research, 36 (Web-Server-Issue): 470-474 (2008)The properties of protein family space depend on experimental design., , , and . Bioinformatics, 21 (11): 2618-2622 (2005)Genetic Algorithms and Information Accumulation during the Evolution of Gene Regulation., and . ICGA, page 225-230. Morgan Kaufmann, (1989)Measuring the physical cohesiveness of proteins using physical interaction enrichment., and . Bioinformatics, 26 (21): 2737-2743 (2010)Inferring Metabolic States in Uncharacterized Environments Using Gene-Expression Measurements., , and . PLoS Computational Biology, (2013)From Endosymbiont to Host-Controlled Organelle: The Hijacking of Mitochondrial Protein Synthesis and Metabolism., and . PLoS Computational Biology, (2007)Lineage-specific gene loss following mitochondrial endosymbiosis and its potential for function prediction in eukaryotes., and . ECCB/JBI, page 150. (2005)Base Pairing Probabilities in a Complete HIV-1 RNA., , , and . Journal of Computational Biology, 3 (2): 253-274 (1996)Optimized design and assessment of whole genome tiling arrays., , , , , , and . ISMB/ECCB (Supplement of Bioinformatics), page 195-204. (2007)Pathway alignment: Application in the comparative analysis of glycolysis., , , and . German Conference on Bioinformatics, Oxford University Press, (1998)