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Efficient and Accurate OTU Clustering with GPU-Based Sequence Alignment and Dynamic Dendrogram Cutting.

, , , and . IEEE/ACM Trans. Comput. Biology Bioinform., 12 (5): 1060-1073 (2015)

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Parallel Pairwise Epistasis Detection on Heterogeneous Computing Architectures., , , and . IEEE Trans. Parallel Distrib. Syst., 27 (8): 2329-2340 (2016)Computing Large-Scale Alignments on a Multi-Cluster., and . CLUSTER, page 38-45. IEEE Computer Society, (2003)SWAPHI-LS: Smith-Waterman Algorithm on Xeon Phi coprocessors for Long DNA Sequences., , , and . CLUSTER, page 257-265. IEEE Computer Society, (2014)CUDA-Accelerated Alignment of Subsequences in Streamed Time Series Data., , and . ICPP, page 10-19. IEEE Computer Society, (2014)KPROC - An Instruction Systolic Architecture for Parallel Prefix Applications., and . Scalable Computing: Practice and Experience, (2000)Constructing large suffix trees on a computational grid., and . J. Parallel Distrib. Comput., 66 (12): 1512-1523 (2006)Design of a Bit-Serial Floating Point Unit for a Fine Grained Parallel Processor Array., , and . PDPTA, page 255-261. CSREA Press, (2003)An FPGA aligner for short read mapping., , and . FPL, page 511-514. IEEE, (2012)Parallelizing Epistasis Detection in GWAS on FPGA and GPU-Accelerated Computing Systems., , , , , and . IEEE/ACM Trans. Comput. Biology Bioinform., 12 (5): 982-994 (2015)BGSA: a bit-parallel global sequence alignment toolkit for multi-core and many-core architectures., , , , , and . Bioinformatics, 35 (13): 2306-2308 (2019)