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On the sub-permutations of pattern avoiding permutations., and . Discrete Mathematics, (2014)Estimating Mutation Distances from Unaligned Genomes., , , and . Journal of Computational Biology, 16 (10): 1487-1500 (2009)A Program for the Construction of a Promoter Model From a Set of Upstream Sequences of Coregulated Genes., , and . German Conference on Bioinformatics, page 157. German Research Center for Biotechnology, (2001)An Alignment-Free Distance Measure for Closely Related Genomes., , and . RECOMB-CG, volume 5267 of Lecture Notes in Computer Science, page 87-99. Springer, (2008)Simulation of DNA sequence evolution under models of recent directional selection., and . Briefings in Bioinformatics, 10 (1): 84-96 (2009)Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA., , and . Bioinformatics, 22 (23): 2858-2864 (2006)gff2aplot: Plotting sequence comparisons., , and . Bioinformatics, 19 (18): 2477-2479 (2003)Post-processing long pairwise alignments., , , and . Bioinformatics, 15 (12): 1012-1019 (1999)Some combinatorial problems on binary rooted trees occurring in population genetics, and . CoRR, (2011)Properties of Sequence Conservation in Upstream Regulatory and Protein Coding Sequences among Paralogs in Arabidopsis thaliana., and . RECOMB-CG, volume 5817 of Lecture Notes in Computer Science, page 217-228. Springer, (2009)