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Multicanonical Monte Carlo calculation of the free-energy map of the base-amino acid interaction., , , and . Journal of Computational Chemistry, 21 (11): 954-962 (2000)ProTherm, version 2.0: thermodynamic database for proteins and mutants., , , , , , and . Nucleic Acids Research, 28 (1): 283-285 (2000)Disentangling the Role of Tetranucleotide in the Sequence-Dependence of DNA Conformation: A Molecular Dynamics Approach., , , and . APBC, page 227-236. Imperial College Press, London, (2006)Thermodynamic database for protein-nucleic acid interactions (ProNIT)., , , , , , and . Bioinformatics, 17 (11): 1027-1034 (2001)Integration of Bioinformatics and Computational Biology to Understand Protein-dna Recognition Mechanism., , , , and . J. Bioinformatics and Computational Biology, 3 (1): 169-183 (2005)H3 Histone Tail Conformation within the Nucleosome and the Impact of K14 Acetylation Studied Using Enhanced Sampling Simulation., , and . PLoS Computational Biology, (2016)Free energy profiles for unwrapping the outer superhelical turn of nucleosomal DNA., , and . PLoS Computational Biology, (2018)ReadOut: structure-based calculation of direct and indirect readout energies and specificities for protein-DNA recognition., , , and . Nucleic Acids Research, 34 (Web-Server-Issue): 124-127 (2006)coliSNP database server mapping nsSNPs on protein structures., , , and . Nucleic Acids Research, 36 (Database-Issue): 409-413 (2008)Structure-Function Relationship in DNA Sequence Recognition by Transcription Factors., , , and . APBC, volume 29 of CRPIT, page 233-238. Australian Computer Society, (2004)