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Response to the comment by Wolf Ihlenfeldt on the paper "Indexing molecules with chemical graph identifiers"., , and . Journal of Computational Chemistry, 33 (2): 238 (2012)Chemoisosterism in the Proteome., and . Journal of Chemical Information and Modeling, 53 (2): 279-292 (2013)FCP: functional coverage of the proteome by structures., , and . Bioinformatics, 22 (14): 1792-1793 (2006)Genetic Algorithms: A Robust Scheme for Geometry Optimizations and Global Minimum Structure Problems., and . Journal of Computational Chemistry, 16 (6): 729-742 (1995)A molecular-field-based similarity study of non-nucleoside HIV-1 reverse transcriptase inhibitors., , and . Journal of Computer-Aided Molecular Design, 13 (1): 79-93 (1999)A molecular-field-based similarity study of non-nucleoside HIV-1 reverse transcriptase inhibitors. 2. The relationship between alignment solutions obtained from conformationally rigid and flexible matching., , and . Journal of Computer-Aided Molecular Design, 14 (1): 39-51 (2000)On the Calculation of Ab Initio Quantum Molecular Similarities for Large Systems: Fitting the Electron Density., , , and . Journal of Computational Chemistry, 15 (10): 1113-1120 (1994)SHED: Shannon Entropy Descriptors from Topological Feature Distributions., and . Journal of Chemical Information and Modeling, 46 (4): 1615-1622 (2006)iPHACE: integrative navigation in pharmacological space., , , and . Bioinformatics, 26 (7): 985-986 (2010)Atomic transferability within the exchange-correlation density., , and . Journal of Computational Chemistry, 21 (15): 1361-1374 (2000)