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Exact likelihood computation in Boolean networks with probabilistic time delays, and its application in signal network reconstruction., , , , , and . Bioinformatics, 30 (3): 414-419 (2014)Quantifying cancer progression with conjunctive Bayesian networks., , , and . Bioinformatics, 25 (21): 2809-2815 (2009)Large-scale inference of conjunctive Bayesian networks., , , , , , , , , and . Bioinformatics, 32 (17): 727-735 (2016)Diversity and complexity of HIV-1 drug resistance: A bioinformatics approach to predicting phenotype from genotype., , , , , , , and . Proc. Natl. Acad. Sci. U.S.A., 99 (12): 8271-8276 (2002)Estimating HIV-1 Fitness Characteristics from Cross-Sectional Genotype Data., , , , and . PLoS Computational Biology, (2014)Binding Profiles of Chromatin-Modifying Proteins Are Predictive for Transcriptional Activity and Promoter-Proximal Pausing., , , , and . Journal of Computational Biology, 19 (2): 126-138 (2012)Learning multiple evolutionary pathways from cross-sectional data., , , , , , and . RECOMB, page 36-44. ACM, (2004)Probabilistic Inference of Viral Quasispecies Subject to Recombination., , , , , and . RECOMB, volume 7262 of Lecture Notes in Computer Science, page 342-354. Springer, (2012)Statistical tests for intra-tumour clonal co-occurrence and exclusivity., , , , , , , , , and 1 other author(s). PLoS Comput. Biol., (2021)ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data., , , and . BMC Bioinformatics, (2011)