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Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization.

G. Misirli, M. Cavaliere, W. Waites, M. Pocock, C. Madsen, O. Gilfellon, R. Honorato-Zimmer, P. Zuliani, V. Danos, and A. Wipat. Bioinformatics, 32 (6): 908-917 (2016)

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Clustering incorporating shortest paths identifies relevant modules in functional interaction networks.J. Hallinan, M. Pocock, S. Addinall, D. Lydall, and A. Wipat. CIBCB, page 228-236. IEEE, (2009)Clustering and Cross-talk in a Yeast Functional Interaction Network.J. Hallinan, and A. Wipat. CIBCB, page 1-8. IEEE, (2006)Taverna: lessons in creating a workflow environment for the life sciences.T. Oinn, R. Greenwood, M. Addis, M. Alpdemir, J. Ferris, K. Glover, C. Goble, A. Goderis, D. Hull, D. Marvin and 7 other author(s). Concurrency and Computation: Practice and Experience, 18 (10): 1067-1100 (2006)Customizable views on semantically integrated networks for systems biology.J. Weile, M. Pocock, S. Cockell, P. Lord, J. Dewar, E. Holstein, D. Wilkinson, D. Lydall, J. Hallinan, and A. Wipat. Bioinformatics, 27 (9): 1299-1306 (2011)Bayesian integration of networks without gold standards.J. Weile, K. James, J. Hallinan, S. Cockell, P. Lord, A. Wipat, and D. Wilkinson. Bioinformatics, 28 (11): 1495-1500 (2012)Composable Modular Models for Synthetic Biology.G. Misirli, J. Hallinan, and A. Wipat. JETC, 11 (3): 22:1-22:19 (2014)BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology.G. Misirli, A. Wipat, J. Mullen, K. James, M. Pocock, W. Smith, N. Allenby, and J. Hallinan. J. Integrative Bioinformatics, (2013)Synthetic Biology Open Language (SBOL) Version 2.2.0.R. III, C. Madsen, J. McLaughlin, T. Nguyen, N. Roehner, B. Bartley, J. Beal, M. Bissell, K. Choi, K. Clancy and 13 other author(s). J. Integrative Bioinformatics, (2018)Motifs and Modules in Fractured Functional Yeast Networks.J. Hallinan, and A. Wipat. CIBCB, page 189-196. IEEE, (2007)Engineering bacterial populations for pattern formation.D. Sutantyo, C. Walker, N. deBono, J. Vargas, A. Wipat, and J. Hallinan. CIBCB, page 1-6. IEEE, (2016)

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Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization.

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copydeleteadd this publication to your clipboardcommunity posthistory of this postURLDOIBibTeXEndNoteAPAChicagoDIN 1505HarvardMSOffice XML Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization.

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Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization.