Consensus sequences of arylsulfatases and phosphonate monoester hydrolases
P. Buchholz. Dataset, (2021)Related to: Patrick C. F. Buchholz, Bert van Loo, Bernard D. G. Eenink, Erich Bornberg-Bauer, Jürgen Pleiss: Äncestral sequences of a large promiscuous enzyme family correspond to bridges in sequence space in a network representation" (submitted).
DOI: 10.18419/darus-1838
Abstract
A multiple sequence alignment was constructed by Clustal Omega for the 95 protein sequences annotated as homologues of arylsulfatases and the 85 protein sequences annotated as homologues of phosphonate monoester hydrolases, respectively. The HMMER software suite was used to derive a profile hidden Markov model from a multiple sequence alignment via the command hmmbuild, and to derive a consensus sequence from a profile hidden Markov model via the command hmmemit.
Related to: Patrick C. F. Buchholz, Bert van Loo, Bernard D. G. Eenink, Erich Bornberg-Bauer, Jürgen Pleiss: Äncestral sequences of a large promiscuous enzyme family correspond to bridges in sequence space in a network representation" (submitted)
%0 Generic
%1 buchholz2021consensus
%A Buchholz, Patrick C. F.
%D 2021
%K darus ubs_10003 ubs_20003 ubs_30187 unibibliografie
%R 10.18419/darus-1838
%T Consensus sequences of arylsulfatases and phosphonate monoester hydrolases
%X A multiple sequence alignment was constructed by Clustal Omega for the 95 protein sequences annotated as homologues of arylsulfatases and the 85 protein sequences annotated as homologues of phosphonate monoester hydrolases, respectively. The HMMER software suite was used to derive a profile hidden Markov model from a multiple sequence alignment via the command hmmbuild, and to derive a consensus sequence from a profile hidden Markov model via the command hmmemit.
@misc{buchholz2021consensus,
abstract = {A multiple sequence alignment was constructed by Clustal Omega for the 95 protein sequences annotated as homologues of arylsulfatases and the 85 protein sequences annotated as homologues of phosphonate monoester hydrolases, respectively. The HMMER software suite was used to derive a profile hidden Markov model from a multiple sequence alignment via the command hmmbuild, and to derive a consensus sequence from a profile hidden Markov model via the command hmmemit.},
added-at = {2022-03-08T18:37:34.000+0100},
affiliation = {Buchholz, Patrick C. F./Universität Stuttgart},
author = {Buchholz, Patrick C. F.},
biburl = {https://puma.ub.uni-stuttgart.de/bibtex/2e17a8d543380e5c80878972b4fba256b/unibiblio},
doi = {10.18419/darus-1838},
howpublished = {Dataset},
interhash = {6e6fb7106d9d0d2df64363b0abde5d2c},
intrahash = {e17a8d543380e5c80878972b4fba256b},
keywords = {darus ubs_10003 ubs_20003 ubs_30187 unibibliografie},
note = {Related to: Patrick C. F. Buchholz, Bert van Loo, Bernard D. G. Eenink, Erich Bornberg-Bauer, Jürgen Pleiss: "Ancestral sequences of a large promiscuous enzyme family correspond to bridges in sequence space in a network representation" (submitted)},
orcid-numbers = {Buchholz, Patrick C. F./0000-0001-5967-3777},
timestamp = {2022-03-08T17:37:34.000+0100},
title = {Consensus sequences of arylsulfatases and phosphonate monoester hydrolases},
year = 2021
}
