PUMA publications for /group/researchcode/workflowsTue Jun 25 15:25:48 CEST 2024PLOS Computational Biology0771-8Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks152019bestPractice jupyter software workflows nullWed Jul 10 08:13:58 CEST 2019The Open Monolith - Keeping Your Codebase (and Your Headaches) Small2017forschungsdaten development software workflows dataverse repository Tue Nov 27 11:47:45 CET 2018New York, NY, USAProceedings of the 2008 ACM SIGMOD International Conference on Management of Data1345--1350SIGMOD '08Provenance and Scientific Workflows: Challenges and Opportunities2008provenance metadata scientific workflows Fri May 11 11:14:42 CEST 2018ChamProvenance and Annotation of Data and Processes183--186Provenance-Based Retrieval: Fostering Reuse and Reproducibility Across Scientific Disciplines2016forschungsdaten provenance reproducibility workflows When computational researchers from several domains cooperate, one recurrent problem is finding tools, methods and approaches that can be used across disciplines, to enhance collaboration through reuse. The paper presents our ongoing work to meet the challenges posed by provenance-based retrieval, proposed as a solution for transdisciplinary scientific collaboration via reuse of scientific workflows. Our work is based upon a case study in molecular dynamics experiments, as part of a larger multi-scale experimental scenario.