Publications

M Orlando, Patrick Buchholz, M Lotti, und Jürgen Pleiss. The GH19 Engineering Database: sequence diversity, substrate scope, and evolution in glycoside hydrolase family 19. PLoS One, (16):e0256817, 2021. [PUMA: PN2-6 EXC2075]

Jürgen Pleiss. Standardized data, scalable documentation, sustainable storage – EnzymeML as a basis for FAIR data management in biocatalysis. ChemCatChem, (13):3909 - 3913, 2021. [PUMA: EXC2075 PN2 PN2-6 curated]

Simone Lauterbach, Hannah Dienhart, Jan Range, Stephan Malzacher, Jan-Dirk Spöring, Dörte Rother, Maria Filipa Pinto, Pedro Martins, Colton E. Lagerman, Andreas S. Bommarius, Amalie Vang Høst, John M. Woodley, Sandile Ngubane, Tukayi Kudanga, Frank T. Bergmann, Johann M. Rohwer, Dorothea Iglezakis, Andreas Weidemann, Ulrike Wittig, Carsten Kettner, Neil Swainston, Santiago Schnell, und Jürgen Pleiss. EnzymeML: seamless data flow and modeling of enzymatic data. Nature Methods, (20)3:400--402, 2023. [PUMA: EXC2075 PN2 PN2-6 PN2-6(II) curated] URL

Alexandra Mack, Max Emperle, Philipp Schnee, Sabrina Adam, Jürgen Pleiss, Pavel Bashtrykov, und Albert Jeltsch. Preferential Self-interaction of DNA Methyltransferase DNMT3A Subunits Containing the R882H Cancer Mutation Leads to Dominant Changes of Flanking Sequence Preferences. Journal of Molecular Biology, (434)7:167482, Elsevier BV, 2022. [PUMA: EXC2075 PN2 PN2-5 PN2-6 PN2-6(II) curated] URL

Felix Neubauer, Paul Bredl, Minye Xu, Keyuriben Patel, Jürgen Pleiss, und Benjamin Uekermann. MetaConfigurator: A User-Friendly Tool for Editing Structured Data Files. Datenbank-Spektrum, (24):161–169, 2024. [PUMA: EXC2075 PN2 PN2-6 PN2-6(II) curated] URL

Henrique F. Carvalho, Luuk Mestrom, Ulf Hanefeld, und Jürgen Pleiss. Beyond the Chemical Step: The Role of Substrate Access in Acyltransferase from Mycobacterium smegmatis. ACS Catal., (14):10077--10088, American Chemical Society, Juni 2024. [PUMA: EXC2075 PN2-6 PN3 PN3-6 curated] URL

Sebastian Höpfl, Jürgen Pleiss, und Nicole E. Radde. Bayesian estimation reveals that reproducible models in Systems Biology get more citations. Scientific reports, (13):2695, Springer, 2023. [PUMA: EXC2075 PN2 PN2-6 curated] URL

Jürgen Pleiss. FAIR Data and Software: Improving Efficiency and Quality of Biocatalytic Science. ACS Catal., (14)4:2709--2718, American Chemical Society, Februar 2024. [PUMA: EXC2075 PN2 PN2-6 curated] URL

Torsten Giess, Selina Itzigehl, Jan Range, Richard Schömig, Johanna R. Bruckner, und Jürgen Pleiss. FAIR and scalable management of small-angle X-ray scattering data. Journal of Applied Crystallography, (56)2:565-575, April 2023. [PUMA: EXC2075 PN2 PN2-6 PN2-6(II) curated] URL

Alex Windels, Jorick Franceus, Jürgen Pleiss, und Tom Desmet. CANDy: Automated analysis of domain architectures in carbohydrate-active enzymes. PLOS ONE, (19)7:1-16, Public Library of Science, Juli 2024. [PUMA: EXC2075 PN2 PN2-6 PN2-6(II) curated] URL

Bernd Flemisch, Sibylle Hermann, Melanie Herschel, Dirk Pflüger, Jürgen Pleiss, Jan Range, Sarbani Roy, Makoto Takamoto, und Benjamin Uekermann. Research Data Management in Simulation Science: Infrastructure, Tools, and Applications. Datenbank-Spektrum, (24):97–105, 2024. [PUMA: PN2 PN2-6 curated] URL

Marcelle B.M. Spera, Samir Darouich, Jürgen Pleiss, und Niels Hansen. Influence of water content on thermophysical properties of aqueous glyceline solutions predicted by molecular dynamics simulations. Fluid Phase Equilibria, (592):114324, 2025. [PUMA: EXC2075 PN2 PN2-6 PN2-6(II) PN3 PN3-8 curated] URL

Torsten Giess, und Jürgen Pleiss. Digitalization of biocatalysis: Best practices to research data management. Methods in Enzymology, Academic Press, 2025. [PUMA: EXC2075 PN2 PN2-6 PN2-6(II) curated] URL