Publications

Timo Hardiman, Hannes Meinhold, Johannes Hofmann, Jennifer C. Ewald, Martin Siemann-Herzberg, and Matthias Reuss. Prediction of kinetic parameters from DNA-binding site sequences for modeling global transcription dynamics in Escherichia coli. METABOLIC ENGINEERING, (12)3:196-211, ACADEMIC PRESS INC ELSEVIER SCIENCE, 525 B ST, STE 1900, SAN DIEGO, CA 92101-4495 USA, May 2010. [PUMA: myown Fed-batch; Position weight Promoter; Cra; rate} regulation; Glucose-limitation; metabolism; Fructose 1,6-bis(phosphate); matrix; polymerase; rate-dependent fruR; Growth RNA network; Transcription regulatory Central volume; Gene carbon Regulation; {Cell] URL

Timo Hardiman, Karin Lemuth, Markus A. Keller, Matthias Reuss, and Martin Siemann-Herzberg. Topology of the global regulatory network of carbon limitation in Escherichia coli. JOURNAL OF BIOTECHNOLOGY, (132)4:359-374, ELSEVIER SCIENCE BV, PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS, December 2007. [PUMA: crp myown cultivation; stringent metabolism; {cra response; central analysis} fed-batch carbon flux metabolic modulon;] URL