Publications

Finian Mwalongo, Michael Krone, Grzegorz Karol Karch, Michael Becher, Guido Reina, and Thomas Ertl. Visualization of Molecular Structures using State-of-the-Art Techniques in WebGL. International Conference on 3D Web Technology (Web3D'14), (19)2014. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:ertl visus:mwalonfn visus sfb716-d3 vis-ertl visus:karchgz vis-gis vis(us) 2014] URL

Barbora Kozlíková, Michael Krone, Martin Falk, Norbert Lindow, Marc Baaden, Daniel Baum, Ivan Viola, Julius Parulek, and Hans-Christian Hege. Visualization of Molecular Structure: State of the Art Revisited. Computer Graphics Forum, 2016. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:falkmn visus sfb716-d4 vis-ertl 2016 vis(us)] URL

Barbora Kozlíková, Michael Krone, Norbert Lindow, Martin Falk, Marc Baaden, Daniel Baum, Ivan Viola, Julius Parulek, and Hans-Christian Hege. Visualization of Molecular Structure: State of the Art. Eurographics Conference on Visualization (EuroVis) - STARs, 2015. [PUMA: sfb716-d4-ertl vis-ertl biovis visus:kroneml 2015 vis(us) visus:falkmn visus] URL

Karsten Schatz, Michael Krone, Christoph Müller, Jens Schneider, Guido Reina, and Thomas Ertl. Visualization of Halo Topologies in Dark Matter Simulations. Proceedings of TopoInVis, 2017. [PUMA: visus:reina sfb716-d4-ertl visus:kroneml visus:ertl visus:mueller visus visus:schatzkn sfb716-d3 sfb716-d4 vis-ertl 2017 vis-gis vis(us)]

Julian Heinrich, Michael Krone, Daniel Weiskopf, and Seán O'Donoghue. Visualising Intrinsic Disorder and Conformational Variation in Protein Ensembles. In Royal Society for Chemistry (Eds.), Faraday Discussions, (169)2014. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus sfb716-d5 vis-ertl visus:weiskopf visus:heinrijn volume-visualisation vis(us) 2014] URL

Michael Krone, Daniel Kauker, Guido Reina, and Thomas Ertl. Visual Analysis of Dynamic Protein Cavities and Binding Sites. IEEE PacificVis - Visualization Notes, (1)2014. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:kaukerdl visus:ertl visus sfb716-d3 vis-ertl vis-gis vis(us) 2014] URL

Michael Krone, Barbora Kozlíková, Norbert Lindow, Marc Baaden, Daniel Baum, Julius Parulek, Hans-Christian Hege, and Ivan Viola. Visual Analysis of Biomolecular Cavities: State of the Art. Computer Graphics Forum, (35)3Whiley, 2016. [PUMA: sfb716-d4-ertl vis-ertl biovis bioinformatik visus:kroneml 2016 vis(us) visus] URL

Thomas Ertl, Michael Krone, Stefan Kesselheim, Katrin Scharnowski, Guido Reina, and Christian Holm. Visual Analysis for Space-Time Aggregation of Biomolecular Simulations. In Royal Society for Chemistry (Eds.), Faraday Discussions, (169)2014. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:holmcn visus:kesselsn visus:ertl visus sfb716-c5 sfb716-d3 vis-ertl volume-visualisation vis-gis vis(us) 2014 visus:scharnkn] URL

Katrin Bidmon, Sebastian Grottel, Fabian Bös, Jürgen Pleiss, and Thomas Ertl. Visual Abstractions of Solvent Pathlines near Protein Cavities. Computer Graphics Forum (EuroVis 2008 Special Issue), (27)32008. [PUMA: sfb716-d4-ertl visus:grottel visus:ertl visus vis-ertl 2008 vis-gis vis(us) visus:pleissjn visus:bidmon] URL

Katrin Bidmon, Guido Reina, Fabian Bös, Jürgen Pleiss, and Thomas Ertl. Time-Based Haptic Analysis of Protein Dynamics. Proceedings of World Haptics Conference (WHC 2007), 2007. [PUMA: visus:reina sfb716-d4-ertl visus:ertl visus vis-ertl 2007 vis-gis vis(us) visus:pleissjn visus:bidmon] URL

Finian Mwalongo, Michael Krone, Guido Reina, and Thomas Ertl. State-of-the-Art Report in Web-based Visualization. Computer Graphics Forum, (35)3Whiley, 2016. [PUMA: visus:reina sfb716-d4-ertl visus:kroneml visus:ertl visus:mwalonfn visus sfb716-d3 vis-ertl vis-gis 2016 vis(us)] URL

Daniel Kauker, Michael Krone, Alexandros Panagiotidis, Guido Reina, and Thomas Ertl. Rendering Molecular Surfaces using Order-Independent Transparency. In Eurographics Association (Eds.), Eurographics Symposium on Parallel Graphics and Visualization (EGPGV), (13)2013. [PUMA: visus:reina sfb716-d4-ertl visus:kroneml visus:kaukerdl 2013 visus:ertl visus sfb716-d3 vis-ertl visus:panagias vis-gis vis(us) fetol mcsimvis] URL

Finian Mwalongo, Michael Krone, Michael Becher, Guido Reina, and Thomas Ertl. Remote Visualization of Dynamic Molecular Data using WebGL. In ACM (Eds.), International Conference on 3D Web Technology (Web3D), (20)2015. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:ertl visus:mwalonfn visus sfb716-d3 vis-ertl vis-gis 2015 vis(us)] URL

Michael Krone, Christoph Müller, Thomas Ertl, Daniel Kauker, Augusto Cravo Silva, Diana Salsa, Manuel Gräber, and Manuela Kallert. Remote Rendering and User Interaction on Mobile Devices for Scientific Visualization. International Symposium on Visual Information Communication and Interaction (VINCI), (8)ACM, 2015. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:kaukerdl visus:ertl visus:mueller visus vis-ertl vis-gis 2015 vis(us)] URL

Katrin Bidmon. Processing of Meshes and Geometry for Visualization Applications. 2010. [PUMA: sfb716-d4-ertl vis-ertl vis(us) 2010 visus:bidmon visus] URL

Michael Krone, Sebastian Grottel, and Thomas Ertl. Parallel Contour-Buildup Algorithm for the Molecular Surface. Proceedings of IEEE Symposium on Biological Data Visualization (biovis'11), 2011. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:grottel 2011 visus:ertl visus sfb716-d3 vis-ertl vis-gis vis(us)] URL

Michael Krone, Carsten Dachsbacher, and Thomas Ertl. Parallel Computation and Interactive Visualization of Time-varying Solvent Excluded Surfaces. International Conference On Bioinformatics and Computational Biology, (2010)ACM, 2010. [PUMA: sfb716-d4-ertl vis-vc biovis visus:kroneml visus:ertl 2010 visus:dachsbcn visus vis-ertl vis-gis vis(us)] URL

Christoph Müller, Michael Krone, Katrin Scharnowski, Guido Reina, and Thomas Ertl. On the Utility of Large High-Resolution Displays for Comparative Scientific Visualisation. International Symposium on Visual Information Communication and Interaction (VINCI), (8)ACM, 2015. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml vvand visus:ertl visus:mueller visus gigapixel sfb716-d3 vis-ertl vis-gis 2015 vis(us) visus:scharnkn] URL

Katrin Scharnowski, Michael Krone, Guido Reina, and Thomas Ertl. On the Reproducibility of our Biomolecular Visualization. In W. Aigner, P. Rosenthal, and C. Scheidegger (Eds.), EuroRV3: EuroVis Workshop on Reproducibility, Verification, and Validation in Visualization, (3)The Eurographics Association, 2015. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:ertl visus sfb716-d3 vis-ertl vis-gis 2015 vis(us) visus:scharnkn] URL

Kai Lawonn, Michael Krone, Thomas Ertl, and Bernhard Preim. On the Reproducibility of Line Integral Convolution for Real-Time Illustration of Molecular Surface Shape and Salient Regions. EuroRV3: EuroVis Workshop on Reproducibility, Verification, and Validation in Visualization, (3)2015. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:ertl visus vis-ertl vis-gis 2015 vis(us)] URL

Sebastian Grottel, Michael Krone, Katrin Scharnowski, and Thomas Ertl. Object-Space Ambient Occlusion for Molecular Dynamics. Proceedings of IEEE Pacific Visualization Symposium 2012, 2012. [PUMA: sfb716-d4-ertl visus:kroneml visus:grottel 2012 visus:ertl visus sfb716-d3 vis-ertl vis-gis vis(us) visus:scharnkn] URL

Naif Alharbi, Mohammad Alharbi, Xavier Martinez, Michael Krone, Alexander Rose, Marc Baaden, Robert S. Laramee, and Matthieu Chavent. Molecular Visualization of Computational Biology Data: A Survey of Surveys. EuroVis 2017 Short Papers, 2017. [PUMA: sfb716-d4-ertl vis-ertl biovis sfb716-d4 visus:kroneml 2017 vis(us) visus] URL

Michael Krone, Florian Frieß, Katrin Scharnowski, Guido Reina, Silvia Fademrecht, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Molecular Surface Maps. IEEE Transactions on Visualization and Computer Graphics (Proceedings of the Scientific Visualization 2016), (23)12017. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml sfbtrr161 sfb716-d4-pleiss visus:ertl visus sfb716-d3 sfb716-d4 vis-ertl visus:friessfn sfb716-c1 2017 vis-gis vis(us) visus:pleissjn visus:scharnkn] URL

Michael Krone, Florian Frieß, Katrin Scharnowski, Guido Reina, Silvia Fademrecht, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Molecular Surface Maps. IEEE Transactions on Visualization and Computer Graphics, (23)12017. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml sfbtrr161 sfb716-d4-pleiss visus:ertl visus sfb716-d3 vis-ertl visus:friessfn sfb716-c1 2017 vis-gis from:mueller vis(us) visus:pleissjn visus:scharnkn] URL

Sebastian Grottel, Michael Krone, Christoph Müller, Guido Reina, and Thomas Ertl. MegaMol – A Prototyping Framework for Particle-based Visualization. IEEE Transactions on Visualization and Computer Graphics, (21)2IEEE, 2015. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:grottel vvand sfb716 visus:ertl visus:mueller visus gigapixel sfb716-d3 vis-ertl vis-gis 2015 vis(us)] URL

Sebastian Grottel, Guido Reina, Michael Krone, Christoph Müller, and Thomas Ertl. MegaMol - for Fun and Profit. Workshop on Visualization in Practice, 2016. [PUMA: visus:reina sfb716-d4-ertl visus:kroneml visus:grottel visus:ertl visus:mueller visus sfb716-d3 sfb716-d4 vis-ertl vis-gis 2016 vis(us)]

Kai Lawonn, Michael Krone, Thomas Ertl, and Bernhard Preim. Line Integral Convolution for Real-Time Illustration of Molecular Surface Shape and Salient Regions. Computer Graphics Forum, (33)32014. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:ertl visus vis-ertl vis-gis vis(us) 2014] URL

Michael Krone, Katrin Bidmon, and Thomas Ertl. Interactive Visualization of Molecular Surface Dynamics. IEEE Transactions on Visualization and Computer Graphics (Proceedings Visualization / Information Visualization 2009), (15)62009. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:ertl visus 2009 vis-ertl vis-gis vis(us) visus:bidmon] URL

Michael Krone. Interactive Visual Analysis of Biomolecular Simulations. 2015. [PUMA: sfb716-d4-ertl vis-ertl biovis sfb716-d4 visus:kroneml 2015 vis(us) visus] URL

Christoph Müller, Michael Krone, Markus Huber, Verena Biener, Dominik Herr, Steffen Koch, Guido Reina, Daniel Weiskopf, and Thomas Ertl. Interactive Molecular Graphics for Augmented Reality Using HoloLens. In Falk Schreiber, and Ralf Hofestädt (Eds.), Journal of Integrative Bioinformatics, 2018. [PUMA: sfb716-d4-ertl myown visus:kroneml sfb716 sfbtrr161-a02 visus:ertl sfbtrr161-inf visus:mueller visus sfb sfb716-d4 visus:weiskopf vis(us) visus:kochsn visus:herrdk visus:huberms]

Martin Falk, Sebastian Grottel, Michael Krone, and Guido Reina. Interactive GPU-based Visualization of Large Dynamic Particle Data. Morgan & Claypool Publishers, 2016. [PUMA: visus:reina sfb716-d4-ertl visus:kroneml visus:grottel visus:falkmn visus sfb716-d3 sfb716-d4 vis-ertl 2016 vis(us)] URL

Pedro Hermosilla, Michael Krone, Victor Guallar, Pere-Pau Vázquez, Àlvar Vinacua, and Timo Ropinski. Interactive GPU-based Generation of Solvent Excluded Surfaces. The Visual Computer (Proceedings of CGI'2017), (33)6Springer, 2017. [PUMA: sfb716-d4-ertl vis-ertl biovis sfb716-d4 visus:kroneml 2017 vis(us) visus] URL

Michael Krone, Guido Reina, Christoph Schulz, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Interactive Extraction and Tracking of Biomolecular Surfaces Features. Computer Graphics Forum, (32)32013. [PUMA: visus:reina sfb716-d4-ertl visus:kroneml 2013 visus:ertl visus sfb716-d3 vis-ertl sfb716-c1 vis-gis vis(us) visus:pleissjn visus:schulzch visus:kulschts] URL

Michael Krone, Martin Falk, Sascha Rehm, Jürgen Pleiss, and Thomas Ertl. Interactive Exploration of Protein Cavities. Computer Graphics Forum, (30)32011. [PUMA: sfb716-d4-ertl biovis visus:kroneml 2011 visus:ertl visus:falkmn visus:rehmsa visus vis-ertl sfb716-c1 vis-gis vis(us) visus:pleissjn] URL

Bertram Thomaß, Jonathan Walter, Michael Krone, Hans Hasse, and Thomas Ertl. Interactive Exploration of Polymer-Solvent Interactions. International Workshop on Vision, Modeling and Visualization, (16)2011. [PUMA: sfb716-d4-ertl visus:kroneml 2011 visus:ertl visus visus:walterjn sfb716-d3 vis-ertl visus:hassehs vis-gis vis(us) visus:thomasbm] URL

Michael Krone, Guido Reina, Sebastian Zahn, Tina Tremel, Carsten Bahnmüller, and Thomas Ertl. Implicit Sphere Shadow Maps. IEEE PacificVis - Visualization Notes, (4)2017. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:ertl visus sfb716-d3 sfb716-d4 vis-ertl 2017 vis-gis vis(us)]

Matthieu Chavent, Bruno Lévy, Michael Krone, Katrin Bidmon, Jean-Philippe Nominé, Thomas Ertl, and Marc Baaden. GPU-powered tools boost molecular visualization. Briefings in Bioinformatics, (12)6Oxford Press, 2011. [PUMA: sfb716-d4-ertl visus:kroneml 2011 visus:ertl visus vis-ertl vis-gis vis(us) visus:bidmon] URL

Michael Krone, Katrin Bidmon, and Thomas Ertl. GPU-based Visualisation of Protein Secondary Structure. Proceedings of TP.CG'08, 2008. [PUMA: sfb716-d4-ertl biovis visus:kroneml visus:ertl visus vis-ertl 2008 vis-gis vis(us) visus:bidmon] URL

Finian Mwalongo, Michael Krone, Michael Becher, Guido Reina, and Thomas Ertl. GPU-based Remote Visualization of Dynamic Molecular Data on the Web. Graphical Models, (88)Elsevier, 2016. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:ertl visus:mwalonfn visus sfb716-d3 vis-ertl vis-gis 2016 vis(us)] URL

Michael Krone, Karsten Schatz, Nora Hieronymus, Christoph Müller, Michael Becher, Tina Barthelmes, April Cooper, Steffen Currle, Patrick Gralka, Marcel Hlawatsch, Lisa Pietrzyk, Tobias Rau, Guido Reina, Rene Trefft, and Thomas Ertl. From Visualization Research to Public Presentation - Design and Realization of a Scientific Exhibition. Proceedings of SIGRAD 2017, 2017. [PUMA: sfb716-d4-ertl visus:hlawatml visus:kroneml simtech visus:rauts visus:mueller visus:schatzkn sfb716-d3 visus:bartheta sfb716-d4 2017 vis(us) visus:gralkapk visus:hieronna visus:reina visus:ertl sfb716-c6 visus sfb716-ö vis-ertl vis-gis]

Michael Krone, John E. Stone, Thomas Ertl, and Klaus Schulten. Fast Visualization of Gaussian Density Surfaces for Molecular Dynamics and Particle System Trajectories. EuroVis 2012 Short Papers, (1)2012. [PUMA: sfb716-d4-ertl biovis visus:kroneml 2012 visus:ertl visus vis-ertl volume-visualisation vis-gis vis(us)] URL

Michael Krone, Markus Huber, Katrin Scharnowski, Manuel Hirschler, Daniel Kauker, Guido Reina, Ulrich Nieken, Daniel Weiskopf, and Thomas Ertl. Evaluation of Visualizations for Interface Analysis of SPH. EuroVis 2014 Short Papers, (3)2014. [PUMA: visus:reina sfb716-d4-ertl visus:kroneml visus:kaukerdl sfb716-a6 visus:ertl visus sfb716-d5 sfb716-d3 vis-ertl visus:weiskopf volume-visualisation vis-gis vis(us) 2014 visus:scharnkn visus:huberms visus:hirschml visus:niekenuh] URL

Daniel Kauker, Michael Krone, Alexandros Panagiotidis, Guido Reina, and Thomas Ertl. Evaluation of per-pixel linked lists for distributed rendering and comparative analysis. In Fabrizio Lamberti, and Andrea Sanna (Eds.), Computing and Visualization in Science, (15)3Springer Berlin, 2013. [PUMA: visus:reina sfb716-d4-ertl visus:kroneml visus:kaukerdl 2013 visus:ertl visus sfb716-d3 vis-ertl visus:panagias vis-gis vis(us) fetol mcsimvis] URL

Benjamin Rau, Florian Frieß, Michael Krone, Christoph Müller, and Thomas Ertl. Enhancing Visualization of Molecular Simulations using Sonification. International Workshop on Virtual and Augmented Reality for Molecular Science (VARMS@IEEEVR), (1)IEEE, 2015. [PUMA: sfb716-d4-ertl biovis visus:kroneml vvand visus:ertl visus:mueller visus vis-ertl vis-gis 2015 vis(us)] URL

Katrin Scharnowski, Michael Krone, Guido Reina, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Comparative Visualization of Molecular Surfaces Using Deformable Models. Computer Graphics Forum, (33)32014. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml visus:ertl visus sfb716-d3 vis-ertl sfb716-c1 vis-gis vis(us) 2014 visus:pleissjn visus:scharnkn visus:kulschts] URL

Tobias Rau, Michael Krone, Guido Reina, and Thomas Ertl. Challenges and Opportunities using Software-defined Visualization in MegaMol. 7th Workshop on Visual Analytics, Information Visualization and Scientific Visualization, 2017. [PUMA: visus:reina sfb716-d4-ertl visus:kroneml visus:rauts visus:ertl visus sfb716-d3 sfb716-d4 vis-ertl 2017 vis-gis vis(us)]

Martin Falk, Michael Krone, and Thomas Ertl. Atomistic Visualization of Mesoscopic Whole-Cell Simulations using Ray-Casted Instancing. Computer Graphics Forum, (32)82013. [PUMA: sfb716-d4-ertl biovis visus:kroneml 2013 visus:ertl visus:falkmn visus vis-ertl vis-gis vis(us)] URL

Martin Falk, Michael Krone, and Thomas Ertl. Atomistic Visualization of Mesoscopic Whole-Cell Simulations. EG Workshop on Visual Computing for Biology and Medicine (VCBM), 2012. [PUMA: sfb716-d4-ertl biovis visus:kroneml 2012 visus:ertl visus:falkmn visus vis-ertl vis-gis vis(us)] URL

Christoph Müller, Michael Krone, Katrin Scharnowski, Guido Reina, and Thomas Ertl. An Evaluation of the Utility of Large High-Resolution Displays for Comparative Scientific Visualisation. International Journal of Software and Informatics, (9)32016. [PUMA: visus:reina sfb716-d4-ertl biovis visus:kroneml vvand visus:ertl visus:mueller visus gigapixel sfb716-d3 sfb716-d4 vis-ertl vis-gis 2016 vis(us) visus:scharnkn]

Patrick Gralka, Sebastian Grottel, Joachim Staib, Karsten Schatz, Grzegorz Karol Karch, M. Hirschler, Michael Krone, Guido Reina, S. Gumhold, and Thomas Ertl. 2016 IEEE Scientific Visualization Contest Winner: Visual and Structural Analysis of Point-based Simulation Ensembles. IEEE Computer Graphics & Applications, 2018. [PUMA: visus:reina sfb716-d4-ertl visus:kroneml visus:grottel sfb716-a6 visus:ertl visus visus:schatzkn sfb716-d3 sfb716-d4 vis-ertl visus:karchgz 2018 vis-gis vis(us) visus:gralkapk]