Publications

Michael Krone, Florian Frieß, Katrin Scharnowski, Guido Reina, Silvia Fademrecht, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Molecular Surface Maps. IEEE Transactions on Visualization and Computer Graphics, (23)12017. [PUMA: 2017 biovis from:mueller sfb716-c1 sfb716-d3 sfb716-d4-ertl sfb716-d4-pleiss sfbtrr161 vis(us) vis-ertl vis-gis visus visus:ertl visus:friessfn visus:kroneml visus:pleissjn visus:reina visus:scharnkn] URL

Tobias Rau, Michael Krone, Guido Reina, and Thomas Ertl. Challenges and Opportunities using Software-defined Visualization in MegaMol. 7th Workshop on Visual Analytics, Information Visualization and Scientific Visualization, 2017. [PUMA: 2017 sfb716-d3 sfb716-d4 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml visus:rauts visus:reina]

Patrick Gralka, Sebastian Grottel, Joachim Staib, Karsten Schatz, Grzegorz Karol Karch, M. Hirschler, Michael Krone, Guido Reina, S. Gumhold, and Thomas Ertl. 2016 IEEE Scientific Visualization Contest Winner: Visual and Structural Analysis of Point-based Simulation Ensembles. IEEE Computer Graphics & Applications, 2018. [PUMA: 2018 sfb716-a6 sfb716-d3 sfb716-d4 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:gralkapk visus:grottel visus:karchgz visus:kroneml visus:reina visus:schatzkn]

Michael Krone, Karsten Schatz, Nora Hieronymus, Christoph Müller, Michael Becher, Tina Barthelmes, April Cooper, Steffen Currle, Patrick Gralka, Marcel Hlawatsch, Lisa Pietrzyk, Tobias Rau, Guido Reina, Rene Trefft, and Thomas Ertl. From Visualization Research to Public Presentation - Design and Realization of a Scientific Exhibition. Proceedings of SIGRAD 2017, 2017. [PUMA: 2017 sfb716-c6 sfb716-d3 sfb716-d4 sfb716-d4-ertl sfb716-ö simtech vis(us) vis-ertl vis-gis visus visus:bartheta visus:ertl visus:gralkapk visus:hieronna visus:hlawatml visus:kroneml visus:mueller visus:rauts visus:reina visus:schatzkn]

Pedro Hermosilla, Michael Krone, Victor Guallar, Pere-Pau Vázquez, Àlvar Vinacua, and Timo Ropinski. Interactive GPU-based Generation of Solvent Excluded Surfaces. The Visual Computer (Proceedings of CGI'2017), (33)6Springer, 2017. [PUMA: 2017 biovis sfb716-d4 sfb716-d4-ertl vis(us) vis-ertl visus visus:kroneml] URL

Naif Alharbi, Mohammad Alharbi, Xavier Martinez, Michael Krone, Alexander Rose, Marc Baaden, Robert S. Laramee, and Matthieu Chavent. Molecular Visualization of Computational Biology Data: A Survey of Surveys. EuroVis 2017 Short Papers, 2017. [PUMA: 2017 biovis sfb716-d4 sfb716-d4-ertl vis(us) vis-ertl visus visus:kroneml] URL

Michael Krone, Guido Reina, Sebastian Zahn, Tina Tremel, Carsten Bahnmüller, and Thomas Ertl. Implicit Sphere Shadow Maps. IEEE PacificVis - Visualization Notes, (4)2017. [PUMA: 2017 biovis sfb716-d3 sfb716-d4 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml visus:reina]

Karsten Schatz, Michael Krone, Christoph Müller, Jens Schneider, Guido Reina, and Thomas Ertl. Visualization of Halo Topologies in Dark Matter Simulations. Proceedings of TopoInVis, 2017. [PUMA: 2017 sfb716-d3 sfb716-d4 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml visus:mueller visus:reina visus:schatzkn]

Christoph Müller, Michael Krone, Katrin Scharnowski, Guido Reina, and Thomas Ertl. An Evaluation of the Utility of Large High-Resolution Displays for Comparative Scientific Visualisation. International Journal of Software and Informatics, (9)32016. [PUMA: 2016 biovis gigapixel sfb716-d3 sfb716-d4 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml visus:mueller visus:reina visus:scharnkn vvand]

Martin Falk, Sebastian Grottel, Michael Krone, and Guido Reina. Interactive GPU-based Visualization of Large Dynamic Particle Data. Morgan & Claypool Publishers, 2016. [PUMA: 2016 sfb716-d3 sfb716-d4 sfb716-d4-ertl vis(us) vis-ertl visus visus:falkmn visus:grottel visus:kroneml visus:reina] URL

Barbora Kozlíková, Michael Krone, Martin Falk, Norbert Lindow, Marc Baaden, Daniel Baum, Ivan Viola, Julius Parulek, and Hans-Christian Hege. Visualization of Molecular Structure: State of the Art Revisited. Computer Graphics Forum, 2016. [PUMA: 2016 biovis sfb716-d4 sfb716-d4-ertl vis(us) vis-ertl visus visus:falkmn visus:kroneml] URL

Sebastian Grottel, Guido Reina, Michael Krone, Christoph Müller, and Thomas Ertl. MegaMol - for Fun and Profit. Workshop on Visualization in Practice, 2016. [PUMA: 2016 sfb716-d3 sfb716-d4 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:grottel visus:kroneml visus:mueller visus:reina]

Michael Krone, Florian Frieß, Katrin Scharnowski, Guido Reina, Silvia Fademrecht, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Molecular Surface Maps. IEEE Transactions on Visualization and Computer Graphics (Proceedings of the Scientific Visualization 2016), (23)12017. [PUMA: 2017 biovis sfb716-c1 sfb716-d3 sfb716-d4 sfb716-d4-ertl sfb716-d4-pleiss sfbtrr161 vis(us) vis-ertl vis-gis visus visus:ertl visus:friessfn visus:kroneml visus:pleissjn visus:reina visus:scharnkn] URL

Michael Krone. Interactive Visual Analysis of Biomolecular Simulations. 2015. [PUMA: 2015 biovis sfb716-d4 sfb716-d4-ertl vis(us) vis-ertl visus visus:kroneml] URL

Finian Mwalongo, Michael Krone, Michael Becher, Guido Reina, and Thomas Ertl. GPU-based Remote Visualization of Dynamic Molecular Data on the Web. Graphical Models, (88)Elsevier, 2016. [PUMA: 2016 biovis sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml visus:mwalonfn visus:reina] URL

Finian Mwalongo, Michael Krone, Guido Reina, and Thomas Ertl. State-of-the-Art Report in Web-based Visualization. Computer Graphics Forum, (35)3Whiley, 2016. [PUMA: 2016 sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml visus:mwalonfn visus:reina] URL

Michael Krone, Barbora Kozlíková, Norbert Lindow, Marc Baaden, Daniel Baum, Julius Parulek, Hans-Christian Hege, and Ivan Viola. Visual Analysis of Biomolecular Cavities: State of the Art. Computer Graphics Forum, (35)3Whiley, 2016. [PUMA: 2016 bioinformatik biovis sfb716-d4-ertl vis(us) vis-ertl visus visus:kroneml] URL

Christoph Müller, Michael Krone, Katrin Scharnowski, Guido Reina, and Thomas Ertl. On the Utility of Large High-Resolution Displays for Comparative Scientific Visualisation. International Symposium on Visual Information Communication and Interaction (VINCI), (8)ACM, 2015. [PUMA: 2015 biovis gigapixel sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml visus:mueller visus:reina visus:scharnkn vvand] URL

Michael Krone, Christoph Müller, Thomas Ertl, Daniel Kauker, Augusto Cravo Silva, Diana Salsa, Manuel Gräber, and Manuela Kallert. Remote Rendering and User Interaction on Mobile Devices for Scientific Visualization. International Symposium on Visual Information Communication and Interaction (VINCI), (8)ACM, 2015. [PUMA: 2015 biovis sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kaukerdl visus:kroneml visus:mueller] URL

Finian Mwalongo, Michael Krone, Michael Becher, Guido Reina, and Thomas Ertl. Remote Visualization of Dynamic Molecular Data using WebGL. In ACM (Eds.), International Conference on 3D Web Technology (Web3D), (20)2015. [PUMA: 2015 biovis sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml visus:mwalonfn visus:reina] URL

Kai Lawonn, Michael Krone, Thomas Ertl, and Bernhard Preim. On the Reproducibility of Line Integral Convolution for Real-Time Illustration of Molecular Surface Shape and Salient Regions. EuroRV3: EuroVis Workshop on Reproducibility, Verification, and Validation in Visualization, (3)2015. [PUMA: 2015 biovis sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml] URL

Katrin Scharnowski, Michael Krone, Guido Reina, and Thomas Ertl. On the Reproducibility of our Biomolecular Visualization. In W. Aigner, P. Rosenthal, and C. Scheidegger (Eds.), EuroRV3: EuroVis Workshop on Reproducibility, Verification, and Validation in Visualization, (3)The Eurographics Association, 2015. [PUMA: 2015 biovis sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml visus:reina visus:scharnkn] URL

Barbora Kozlíková, Michael Krone, Norbert Lindow, Martin Falk, Marc Baaden, Daniel Baum, Ivan Viola, Julius Parulek, and Hans-Christian Hege. Visualization of Molecular Structure: State of the Art. Eurographics Conference on Visualization (EuroVis) - STARs, 2015. [PUMA: 2015 biovis sfb716-d4-ertl vis(us) vis-ertl visus visus:falkmn visus:kroneml] URL

Benjamin Rau, Florian Frieß, Michael Krone, Christoph Müller, and Thomas Ertl. Enhancing Visualization of Molecular Simulations using Sonification. International Workshop on Virtual and Augmented Reality for Molecular Science (VARMS@IEEEVR), (1)IEEE, 2015. [PUMA: 2015 biovis sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml visus:mueller vvand] URL

Sebastian Grottel, Michael Krone, Christoph Müller, Guido Reina, and Thomas Ertl. MegaMol – A Prototyping Framework for Particle-based Visualization. IEEE Transactions on Visualization and Computer Graphics, (21)2IEEE, 2015. [PUMA: 2015 biovis gigapixel sfb716 sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:grottel visus:kroneml visus:mueller visus:reina vvand] URL

Finian Mwalongo, Michael Krone, Grzegorz Karol Karch, Michael Becher, Guido Reina, and Thomas Ertl. Visualization of Molecular Structures using State-of-the-Art Techniques in WebGL. International Conference on 3D Web Technology (Web3D'14), (19)2014. [PUMA: 2014 biovis sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:karchgz visus:kroneml visus:mwalonfn visus:reina] URL

Michael Krone, Markus Huber, Katrin Scharnowski, Manuel Hirschler, Daniel Kauker, Guido Reina, Ulrich Nieken, Daniel Weiskopf, and Thomas Ertl. Evaluation of Visualizations for Interface Analysis of SPH. EuroVis 2014 Short Papers, (3)2014. [PUMA: 2014 sfb716-a6 sfb716-d3 sfb716-d4-ertl sfb716-d5 vis(us) vis-ertl vis-gis visus visus:ertl visus:hirschml visus:huberms visus:kaukerdl visus:kroneml visus:niekenuh visus:reina visus:scharnkn visus:weiskopf volume-visualisation] URL

Kai Lawonn, Michael Krone, Thomas Ertl, and Bernhard Preim. Line Integral Convolution for Real-Time Illustration of Molecular Surface Shape and Salient Regions. Computer Graphics Forum, (33)32014. [PUMA: 2014 biovis sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml] URL

Katrin Scharnowski, Michael Krone, Guido Reina, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Comparative Visualization of Molecular Surfaces Using Deformable Models. Computer Graphics Forum, (33)32014. [PUMA: 2014 biovis sfb716-c1 sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml visus:kulschts visus:pleissjn visus:reina visus:scharnkn] URL

Julian Heinrich, Michael Krone, Daniel Weiskopf, and Seán O'Donoghue. Visualising Intrinsic Disorder and Conformational Variation in Protein Ensembles. In Royal Society for Chemistry (Eds.), Faraday Discussions, (169)2014. [PUMA: 2014 biovis sfb716-d4-ertl sfb716-d5 vis(us) vis-ertl visus visus:heinrijn visus:kroneml visus:weiskopf volume-visualisation] URL

Thomas Ertl, Michael Krone, Stefan Kesselheim, Katrin Scharnowski, Guido Reina, and Christian Holm. Visual Analysis for Space-Time Aggregation of Biomolecular Simulations. In Royal Society for Chemistry (Eds.), Faraday Discussions, (169)2014. [PUMA: 2014 biovis sfb716-c5 sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:holmcn visus:kesselsn visus:kroneml visus:reina visus:scharnkn volume-visualisation] URL

Michael Krone, Daniel Kauker, Guido Reina, and Thomas Ertl. Visual Analysis of Dynamic Protein Cavities and Binding Sites. IEEE PacificVis - Visualization Notes, (1)2014. [PUMA: 2014 biovis sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kaukerdl visus:kroneml visus:reina] URL

Daniel Kauker, Michael Krone, Alexandros Panagiotidis, Guido Reina, and Thomas Ertl. Evaluation of per-pixel linked lists for distributed rendering and comparative analysis. In Fabrizio Lamberti, and Andrea Sanna (Eds.), Computing and Visualization in Science, (15)3Springer Berlin, 2013. [PUMA: 2013 fetol mcsimvis sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kaukerdl visus:kroneml visus:panagias visus:reina] URL

Martin Falk, Michael Krone, and Thomas Ertl. Atomistic Visualization of Mesoscopic Whole-Cell Simulations using Ray-Casted Instancing. Computer Graphics Forum, (32)82013. [PUMA: 2013 biovis sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:falkmn visus:kroneml] URL

Katrin Scharnowski, Michael Krone, Filip Sadlo, Philipp Beck, Johannes Roth, Hans-Rainer Trebin, and Thomas Ertl. 2012 IEEE Visualization Contest Winner: Visualization of Polarization Domains in Barium Titanate. IEEE Computer Graphics & Applications, (33)52013. [PUMA: 2013 sfb716-b1 sfb716-d4-ertl simtech vis(us) vis-ertl vis-gis visus visus:beckpp visus:ertl visus:kroneml visus:rothjs visus:sadlo visus:scharnkn visus:trebinhr] URL

Michael Krone, Guido Reina, Christoph Schulz, Tobias Kulschewski, Jürgen Pleiss, and Thomas Ertl. Interactive Extraction and Tracking of Biomolecular Surfaces Features. Computer Graphics Forum, (32)32013. [PUMA: 2013 sfb716-c1 sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml visus:kulschts visus:pleissjn visus:reina visus:schulzch] URL

Daniel Kauker, Michael Krone, Alexandros Panagiotidis, Guido Reina, and Thomas Ertl. Rendering Molecular Surfaces using Order-Independent Transparency. In Eurographics Association (Eds.), Eurographics Symposium on Parallel Graphics and Visualization (EGPGV), (13)2013. [PUMA: 2013 fetol mcsimvis sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kaukerdl visus:kroneml visus:panagias visus:reina] URL

Martin Falk, Michael Krone, and Thomas Ertl. Atomistic Visualization of Mesoscopic Whole-Cell Simulations. EG Workshop on Visual Computing for Biology and Medicine (VCBM), 2012. [PUMA: 2012 biovis sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:falkmn visus:kroneml] URL

Michael Krone, John E. Stone, Thomas Ertl, and Klaus Schulten. Fast Visualization of Gaussian Density Surfaces for Molecular Dynamics and Particle System Trajectories. EuroVis 2012 Short Papers, (1)2012. [PUMA: 2012 biovis sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:kroneml volume-visualisation] URL

Sebastian Grottel, Michael Krone, Katrin Scharnowski, and Thomas Ertl. Object-Space Ambient Occlusion for Molecular Dynamics. Proceedings of IEEE Pacific Visualization Symposium 2012, 2012. [PUMA: 2012 sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:grottel visus:kroneml visus:scharnkn] URL

Bertram Thomaß, Jonathan Walter, Michael Krone, Hans Hasse, and Thomas Ertl. Interactive Exploration of Polymer-Solvent Interactions. International Workshop on Vision, Modeling and Visualization, (16)2011. [PUMA: 2011 sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:hassehs visus:kroneml visus:thomasbm visus:walterjn] URL

Michael Krone, Sebastian Grottel, and Thomas Ertl. Parallel Contour-Buildup Algorithm for the Molecular Surface. Proceedings of IEEE Symposium on Biological Data Visualization (biovis'11), 2011. [PUMA: 2011 biovis sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:grottel visus:kroneml] URL

Michael Krone, Katrin Bidmon, and Thomas Ertl. Interactive Visualization of Molecular Surface Dynamics. IEEE Transactions on Visualization and Computer Graphics (Proceedings Visualization / Information Visualization 2009), (15)62009. [PUMA: 2009 biovis sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:bidmon visus:ertl visus:kroneml] URL

Michael Krone, Martin Falk, Sascha Rehm, Jürgen Pleiss, and Thomas Ertl. Interactive Exploration of Protein Cavities. Computer Graphics Forum, (30)32011. [PUMA: 2011 biovis sfb716-c1 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:falkmn visus:kroneml visus:pleissjn visus:rehmsa] URL

Matthieu Chavent, Bruno Lévy, Michael Krone, Katrin Bidmon, Jean-Philippe Nominé, Thomas Ertl, and Marc Baaden. GPU-powered tools boost molecular visualization. Briefings in Bioinformatics, (12)6Oxford Press, 2011. [PUMA: 2011 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:bidmon visus:ertl visus:kroneml] URL

Katrin Bidmon. Processing of Meshes and Geometry for Visualization Applications. 2010. [PUMA: 2010 sfb716-d4-ertl vis(us) vis-ertl visus visus:bidmon] URL

Michael Krone, Carsten Dachsbacher, and Thomas Ertl. Parallel Computation and Interactive Visualization of Time-varying Solvent Excluded Surfaces. International Conference On Bioinformatics and Computational Biology, (2010)ACM, 2010. [PUMA: 2010 biovis sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:dachsbcn visus:ertl visus:kroneml vis-vc] URL

Michael Krone, Katrin Bidmon, and Thomas Ertl. GPU-based Visualisation of Protein Secondary Structure. Proceedings of TP.CG'08, 2008. [PUMA: 2008 biovis sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:bidmon visus:ertl visus:kroneml] URL

Katrin Bidmon, Sebastian Grottel, Fabian Bös, Jürgen Pleiss, and Thomas Ertl. Visual Abstractions of Solvent Pathlines near Protein Cavities. Computer Graphics Forum (EuroVis 2008 Special Issue), (27)32008. [PUMA: 2008 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:bidmon visus:ertl visus:grottel visus:pleissjn] URL

Katrin Bidmon, Guido Reina, Fabian Bös, Jürgen Pleiss, and Thomas Ertl. Time-Based Haptic Analysis of Protein Dynamics. Proceedings of World Haptics Conference (WHC 2007), 2007. [PUMA: 2007 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:bidmon visus:ertl visus:pleissjn visus:reina] URL