Moving Charged Particles in Lattice Boltzmann-Based Electrokinetics. J. Chem. Phys, 2016. [PUMA: 2016 sfb716 sfb716-c sfb716-c5 visus:holmcn visus:rempfegg]
Nanoparticle Translocation through Conical Nanopores: A Finite Element Study of Electrokinetic Transport. Macromolecular Theory and Simulations, (25)2016. [PUMA: 2016 sfb716 sfb716-c sfb716-c5 visus:holmcn visus:rempfegg] URL
Selective Trapping of DNA Using Glass Microcapillaries. Langmuir, (32)332016. [PUMA: 2016 sfb716 sfb716-c sfb716-c5 visus:holmcn visus:rempfegg] URL
Reducing spurious flow in simulations of electrokinetic phenomena. J. Chem. Phys., (145)449012016. [PUMA: 2016 sfb716 sfb716-c sfb716-c5 visus:holmcn visus:rempfegg] URL
Towards Lattice-Boltzmann on Dynamically Adaptive Grids - Minimally-Invasive Grid Exchange in ESPResSo. In M. (Hrsg) Papadrakakis, V. (Hrsg) Papadopoulos, G. (Hrsg) Stefanou, and V. (Hrsg) Plevris (Eds.), ECCOMAS Congress 2016, VII European Congress on Computational Methods in Applied Sciences and Engineering., (2016)32016. [PUMA: 2016 sfb716 sfb716-c sfb716-c5 sfb716-d sfb716-d8 visus:holmcn visus:lahnerml visus:mehlmm visus:rempfegg visus:weikfn]
Simulations of DNA Translocation through Nanopores. 2014. [PUMA: 2014 sfb716 sfb716-c sfb716-c5 visus:kesselsn] URL
Implementation of an improved P3M algorithm. 2011. [PUMA: 2011 sfb716 sfb716-c sfb716-c5 visus:weikfn]
Origin of Current Blockades in Nanopore Translocation Experiments. Physical Review Letters, (112)12014. [PUMA: 2014 sfb716 sfb716-c sfb716-c5 visus:holmcn visus:kesselsn] URL
Full atomistic simulations of DNA in a nanopore. 2012. [PUMA: 2012 sfb716 sfb716-c sfb716-c5]
Visual Analysis for Space-Time Aggregation of Biomolecular Simulations. In Royal Society for Chemistry (Eds.), Faraday Discussions, (169)2014. [PUMA: 2014 biovis sfb716-c5 sfb716-d3 sfb716-d4-ertl vis(us) vis-ertl vis-gis visus visus:ertl visus:holmcn visus:kesselsn visus:kroneml visus:reina visus:scharnkn volume-visualisation] URL
Efficient algorithms for electrostatic interactions including dielectric contrasts. Entropy, (15)2013. [PUMA: 2013 sfb716 sfb716-c sfb716-c5 visus:arnoldal visus:fahrenfn visus:holmcn visus:kesselsn] URL
A Lattice Model for Electrokinetics. 2013. [PUMA: 2013 sfb716 sfb716-c sfb716-c5 visus:rempfegg]
Lattice-Boltzmann Simulations in Complex Geometries. 2010. [PUMA: 2010 sfb716 sfb716-c sfb716-c5 visus:rempfegg]
Tracer diffusion in a crowded cylindrical channel. Phys Rev E, (87)2013. [PUMA: 2013 sfb716 sfb716-c sfb716-c5 visus:holmcn visus:kesselsn] URL
Modeling DNA in Nanopores. In R. Podgornik, D.S. Dean, A. Naji, and J. Dobnikar (Eds.), Electrostatics of Soft and Disordered Media, Pan Stanford, 2013. [PUMA: 2013 sfb716 sfb716-c sfb716-c5 visus:holmcn visus:kesselsn]
Effects of dielectric mismatch and chain flexibility on the translocation barriers of charged macromolecules through solid state nanopores. Soft Matter, (8)2012. [PUMA: 2012 sfb716-c5 visus:holmcn visus:kesselsn] URL
ESPResSo 3.1 - Molecular Dynamics Software for Coarse-Grained Models. In M. Griebel, and M.A. Schweitzer (Eds.), Lecture Notes in Computational Science and Engineering, Springer, 2012. [PUMA: 2012 sfb716 sfb716-c sfb716-c5 sfb716-d sfb716-d6 visus:arnoldal visus:holmcn visus:kesselsn visus:roehmdc]
Influence of pore dielectric boundaries on the translocation barrier of DNA.. arXiv:1002.2759v1 cond-mat.soft, 2010. [PUMA: 2010 sfb716-c5 visus:holmcn visus:kesselsn] URL
Applying ICC* to DNA translocation: Effect of dielectric boundaries. Computer Physics Communications, (182)12011. [PUMA: 2011 sfb716-c5 visus:holmcn visus:kesselsn] URL
An iterative, fast, linear-scaling method for computing induced charges on arbitrary dielectric boundaries in large system simulations. J. Chem. Phys., 2010. [PUMA: 2010 sfb716-c5 visus:holmcn]