Model-Based Characterization of Inflammatory Gene Expression Patterns of Activated Macrophages. PLoS Computational Biology, July 2016. [PUMA: ISYS Macrophages SysBio Virtual_Liver Virtuelle_Leber]
Basic Regulatory Principles of Escherichia coli's Electron Transport Chain for Varying Oxygen Conditions. PLoS One, (9)September 2014. [PUMA: ISYS Sysbio]
Integration of Boolean models exemplified on hepatocyte signal transduction. Briefings in Bioinformatics, (13)3:365--376, October 2011. [PUMA: ISYS Sysbio]
Rapid Sampling of Escherichia Coli After Changing Oxygen Conditions Reveals Transcriptional Dynamics. genes, (8)February 2017. [PUMA: ISYS RecogNice Sysbio]
Transition of an Anaerobic Escherichia coli Culture to Aerobiosis: Balancing mRNA and Protein Levels in a Demand-Directed Dynamic Flux Balance Analysis. PLoS One, (11):e0158711, 2016. [PUMA: ISYS RecogNice Sysbio]
Analysis of Boolean Models using Quality Assurance Methods from Software Engineering. IEEE Conference on Control Applications (CCA), 518--523, Yokohama, Japan, 2010. [PUMA: ISYS Sysbio]
Methods for analysis of evolutive adaptation of E.coli. SICE Conference, 1359--1365, Kagawa, Japan, 2007. [PUMA: ISYS Sysbio]
Mechanism of PP2A-mediated IKK dephosphorylation: a systems biological approach. BMC Systems Biology, 2009. [PUMA: ISYS Sysbio]
Analyse der evolutiven Adaptation am Beispiel einer pyruvat-auxotrophen Escherichia coli-Mutante. at - Automatisierungstechnik, 257--268, 2008. [PUMA: ISYS Sysbio]
Model-based analysis of an adaptive evolution experiment with Escherichia coli in a pyruvate limited continuous culture with glycerol. EURASIP Journal of Bioinformatics and Systems Biology, (14)2012. [PUMA: ISYS InkomBio SysBio adaptive_Evolution]
Modeling Time Delay in the NFkappaB Signaling Pathway following Low Dose IL-1 Stimulation. EURASIP Journal on Bioinformatics and Systems Biology, 12011. [PUMA: ISYS Sysbio]
LEMming: A Linear Error Model to Normalize Parallel Quantitative Real-Time PCR (qPCR) Data as an Alternative to Reference Gene Based Methods. PLoS One, (10)92015. [PUMA: ISYS SysBio Virtuelle_Leber qPCR]
Sensitivity Analysis of Programmed Cell Death and Implications for Crosstalk Phenomena during Tumor Necrosis Factor Stimulation. IEEE Conference on Control Applications (CCA), 1746--1752, Munich, Germany, 2006. [PUMA: ISYS Sysbio]
A rapid method for the extraction and analysis of carotenoids and other hydrophobic substances suitable for systems biology studies with photosynthetic bacteria. Metabolites, 912--930, 2013. [PUMA: ISYS Sysbio]
Analyising the role of UVB-induced Translational Inhibition and PP2Ac Deactivation in NF-kB Singanlling Using Minimal Mathematical Model. PLoS Computational Biology, 2012. [PUMA: ISYS Sysbio]
A systems biology approach to analyse leaf carbohydrate metabolism in Arabidopsis thaliana. EURASIP Journal on Bioinformatics and Systems Biology, 22011. [PUMA: ISYS Sysbio]
Modeling the LPS-induced Effects on Transcription Factor Activation and Gene Expression in Murine Macrophages. International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 3989--3992, Milano, Italy, August 2015. [PUMA: ISYS Inflammation Signal_Transduction Sysbio]
The Glansdorff-Prigogine stability criteria for biochemical reaction networks. Automatica, (47):1097--1104, 2011. [PUMA: ISYS Sysbio]
An Introduction to Kinetic, Constraint-Based and Boolean Modeling in Systems Biology. IEEE Conference on Control Applications (CCA), 129--134, Yokohama, Japan, 2010. [PUMA: ISYS Sysbio]
A mathematical model of metabolism and regulation provides a systems-level view of how Escherichia coli responds to oxygen. Frontiers in Microbiology, (5)5:124, March 2014. [PUMA: ISYS Sysbio]