Publications

Philippe Thomas, Tamara Bobić, Ulf Leser, Martin Hofmann-Apitius, and Roman Klinger. Weakly Labeled Corpora as Silver Standard for Drug-Drug and Protein-Protein Interaction. Proceedings of the Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM) on Language Resources and Evaluation Conference (LREC), Istanbul, Turkey, 2012. [PUMA: ddi drug extraction myown nlp ppi protein relation resources] URL

Tamara Bobic, and Roman Klinger. Committee-based Selection of Weakly Labeled Instances for Learning Relation Extraction. Research in Computing Science, (70):187-197, 2013. [PUMA: distant labeling myown protein recognition relation supervision weak] URL

Tamara Bobic, Roman Klinger, Philippe Thomas, and Martin Hofmann-Apitius. Improving Distantly Supervised Extraction of Drug-Drug and Protein-Protein Interactions. Proceedings of the Joint Workshop on Unsupervised and Semi-Supervised Learning in NLP, 35-43, Association for Computational Linguistics, Avignon, France, April 2012. [PUMA: bionlp ddi drug interaction myown nlp ppi protein] URL

Philippe Thomas, Illés Solt, Roman Klinger, and Ulf Leser. Learning Protein Protein Interaction Extraction using Distant Supervision. Proceedings of Workshop on Robust Unsupervised and Semisupervised Methods in Natural Language Processing, 25-32, Hissar, Bulgaria, September 2011. [PUMA: distant myown ppi protein supervision] URL

Larry Smith, Lorraine K. Tanabe, Rie Johnson nee Ando, Cheng-Ju Juo, I-Fang Chung, Chun-Nan Hsu, Yu-Shi Lin, Roman Klinger, Christoph M. Friedrich, Kuzman Ganchev, Manabu Torii, Hongfang Liu, Barry Haddow, Craig A. Struble, Richard J. Povinelli, Andreas Vlachos, William A. Baumgartner Jr., Lawrence Hunter, Bob Carpenter, Richard Tzong-Han Tsai, Hong jie Dai, Feng Liu, Yifei Chen, Chengjie Sun, Sophia Katrenko, Pieter Adriaans, Christian Blaschke, Rafel Torres Perez, Mariana Neves, Preslav Nakov, Anna Divoli, Manuel Mana, Jacinto Mata-Vazquez, and W. John Wilbur. Overview of BioCreative II Gene Mention Recognition. Genome Biology, (9)Suppl 2:S2.2-S2.18, September 2008. [PUMA: bionlp competition gene myown ner protein shared task] URL