Publications

Soo-Yon Kim, Martin Görz, und Sandra Geisler. KONDA: An LLM-based Tool for Semantic Annotation and Knowledge Graph Creation Using Ontologies for Research Data. Zenodo, August 2025. [PUMA: AI LLM forschungsdaten metadata tools] URL

Ove Johan Ragnar Gustafsson, Sean R. Wilkinson, Finn Bacall, Stian Soiland-Reyes, Simone Leo, Luca Pireddu, Stuart Owen, Nick Juty, José M. Fernández, Tom Brown, Hervé Ménager, Björn Grüning, Salvador Capella-Gutierrez, Frederik Coppens, und Carole Goble. WorkflowHub: a registry for computational workflows. Scientific Data, (12)1:837--, 2025. [PUMA: forschungsdaten metadata registry researchObjects tools] URL

Florian Fritze, Björn Selent, Karoline Weinspach, Sarbani Roy, und Dorothea Iglezakis. Efficient Data Curation by Automating Workflows. In Philipp Kling (Hrsg.), E-Science-Tage 2025 Research Data Management: Challenges in a Changing World, heiBOOKS 2025. [PUMA: curation forschungsdaten metadata myown tools]

Roman Baum. Einführung in Terminologien und Terminologiedienste. Zenodo, Februar 2025. [PUMA: forschungsdaten metadata pid terminologies tools] URL

Rungsiman Nararatwong, Natthawut Kertkeidkachorn, und Ryutaro Ichise. Knowledge Graph Visualization: Challenges, Framework, and Implementation. 2020 IEEE Third International Conference on Artificial Intelligence and Knowledge Engineering (AIKE), 174-178, Dezember 2020. [PUMA: knowledgegraph tools visualization]

Björn Schembera. Like a rainbow in the dark: metadata annotation for HPC applications in the age of dark data. The Journal of Supercomputing, (77)8:8946--8966, 2021. [PUMA: engmeta extraction metadata tools] URL

Michael Selzer. Kadi4Mat - Karlsruhe Data Infrastructure for Materials Science. Zenodo, 2023. [PUMA: eln forschungsdaten software tools] URL

Stefan Bieliauskas, und Andreas Schreiber. DLR-SC/prov-comics: QS PROV Comics Prototype - Big fixes. Zenodo, April 2017. [PUMA: comics forschungsdaten javascript metadata provenance software tools] URL

Benedikt Heinrichs, und Marius Politze. Moving towards a General Metadata Extraction Solution for Research Data with State-of-the-Art Methods.. KDIR, 227--234, 2020. [PUMA: forschungsdaten harvesting metadata similarity tools]

Robert L Grossman. Data Lakes, Clouds, and Commons: A Review of Platforms for Analyzing and Sharing Genomic Data. Trends in genetics : TIG, (35)3:223--234, England, März 2019. [PUMA: definition forschungsdaten tools] URL

Paul Richmond, Dawn Walker, Simon Coakley, und Daniela Romano. High performance cellular level agent-based simulation with FLAME for the GPU. Briefings in bioinformatics, (11)3:334--347, Oxford Univ Press, 2010. [PUMA: simulations tools]

Matthias Ruf, und Holger Steeb. An open, modular, and flexible micro X-ray computed tomography system for research. Review of Scientific Instruments, (91)11:113102, 2020. [PUMA: relatedpublication sfb1313 tools x-ray] URL

Timo Koch, Dennis Gläser, Anett Seeland, Sarbani Roy, Katharina Schulze, Kilian Weishaupt, David Boehringer, Sibylle Hermann, und Bernd Flemisch. A sustainable infrastructure concept for improved accessibility, reusability, and archival of research software. 2023. [PUMA: forschungsdaten repository software tools]

Markus Hirsch, Dorothea Iglezakis, Frank Leymann, und Michael Zimmermann. The ReSUS Project - Infrastructure for Sharing Research Software. E-Science-Tage 2021: Share Your Research Data, 267-276, heiBOOKS, 2022. [PUMA: forschungsdaten metadata myown repository software tools] URL

Johannes Lipp, Lars Gleim, Michael Cochez, Iraklis Dimitriadis, Hussain Ali, Daniel Hoppe Alvarez, Christoph Lange, und Stefan Decker. Towards Easy Vocabulary Drafts with Neologism 2.0. ESWC2021 Poster and Demo Track, 2021. [PUMA: metadata ontologie tools] URL

Kerstin Helbig, Ivonne Anders, Petra Buchholz, Gianpiero Favella, Daniela Hausen, Sonja Hendriks, Jochen Klar, Evamaria Krause, Thilo Paul-Stüve, Karsten Peters, Torsten Rathmann, Stephanie Rehwald, Jessica Rex, Volker Soßna, Johannes Sperling, Annette Strauch, und Pia Voigt. Erfahrungen und Empfehlungen aus der Beratung bei Datenmanagementplänen. Bausteine Forschungsdatenmanagement, 2:29–40, Okt. 2020. [PUMA: checklisten dmp forschungsdaten tools] URL

Michael C. Jaeger, Oliver Fendt, Robert Gobeille, Maximilian Huber, Johannes Najjar, Kate Stewart, Steffen Weber, und Andreas Würl. The FOSSology Project: 10 Years Of License Scanning. Journal of Open Law, Technology & Society, (9)1:9-18, 2018. [PUMA: licensing software tools] URL

Ricardo Amorim, João Aguiar Castro, João Rocha, und Cristina Ribeiro. LabTablet: Semantic Metadata Collection on a Multi-domain Laboratory Notebook. Communications in Computer and Information Science, (478):193-205, November 2014. [PUMA: eln forschungsdaten metadata ontologie tools]

Björn Schembera. Like a rainbow in the dark: metadata annotation for HPC applications in the age of dark data. In Hamid Arabnia (Hrsg.), The Journal of Supercomputing, 2021. [PUMA: automated forschungsdaten hpc-computing metadata tools] URL

Pierre Tremouilhac, Chia-Lin Lin, Pei-Chi Huang, Yu-Chieh Huang, An Nguyen, Nicole Jung, Felix Bach, Robert Ulrich, Bernhard Neumair, Achim Streit, und Stefan Bräse. The Repository Chemotion: Infrastructure for Sustainable Research in Chemistry. April 2020. [PUMA: chemie forschungsdaten repository tools] URL