Publications

Mhd. Amer Wafai. Sparse matrix vector multiplications on graphic processors. Nobelstr. 19, 70569, Stuttgart, November 2009. [PUMA: CUDA Graphics myown SCOPE Architecture HLRS Device Compute GPU Unit Processing Unified]

Mhd. Amer Wafai, Colin W. Glass, and Christoph Niethammer. Portable Codes on New HPC Architectures. In Rainer Keller, David Kramer, and Jan-Philipp Weiß (Eds.), Facing the Multicore-Challenge III 2012, (7686):133-134, Springer Berlin Heidelberg, September 2012. [PUMA: Portable myown SCOPE HLRS Hardware Programming Parallel GPU HPC mown architecture]

Nikola Tchipev, Amer Wafai, Colin W. Glass, Wolfgang Eckhardt, Alexander Heinecke, Hans-Joachim Bungartz, and Philipp Neumann. Optimized Force Calculation of Molecular Dynamics Simulations for the Intel Xeon Phi. In Jesper Larsson Träff, Sascha Hunold, and Francesco Versaci (Eds.), Euro-Par 2015: Parallel Processing, (9233)Vienna, Austria, August 2015. [PUMA: law myown HLRS distributed gather performance parallelization intel core phi site xeon third absolute processing interaction force operation short shared calculation memory SCOPE molecular range newton yellow cell optimization parallel scatter and colored dynamic linked]

Mhd. Amer Wafai, Zaheer Ahmed, Rainer Keller, Sven Holzmann, Björn Sander, and Michael Resch. Optimization of industrial Neural Network simulators for GPGPUs. In Dickson K. W. Chiu, Minhong Wang, Elvira Popescu, Qing Li, and Rynson Lau (Eds.), New Horizons in Web Based Learning, (7697):21-29, Springer Berlin Heidelberg, December 2011. [PUMA: CUDA myown Parallelisation SCOPE Propagation Network HLRS Back GPU Neural GPGPU]

Colin W. Glass, Steffen Reiser, Gábor Rutkai, Stephan Deublein, Andreas Köster, Gabriela Guevara-Carrion, Amer Wafai, Martin Horsch, Martin Bernreuther, Thorsten Windmann, Hans Hasse, and Jadran Vrabec. ms2: A molecular simulation tool for thermodynamic properties, new version release. An International Journal and Program Library for Computational Physics and Physical Chemistry, (185)12:3302--3306, July 2014. [PUMA: myown SCOPE HLRS simulation Carlo Vapor--liquid Monte Molecular dynamics derivatives equilibrium Transport potential properties]

V. Janjic, K. Hammond, M. Goli, J. McCall, K. Idrees, C. Glass, and M. A. Wafai. Bridging the Divide: A New Methodology for Semi-Automatic Programming of Heterogeneous Parallel Machines. High-Level Programming for Heterogeneous and Hierarchical Parallel Systems, January 2016. [PUMA: myown SCOPE Heterogeneous HLRS Parallel]

Dariusz Król, Michał Orzechowski, Jacek Kitowski, Christoph Niethammer, Anthony Sulistio, and Amer Wafai. A Cloud-based Data Farming Platform for Molecular Dynamics Simulations. Utility and Cloud Computing (UCC), 579 - 584, IEEE, December 2014. [PUMA: farming myown SCOPE computing HLRS Cloud MD simulations Data]